Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021889
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...    29   4.0  
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    28   7.0  

>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 211  INSYVQLVNFKRCELKPGLSGDF*RDLL 128
            +  +    N+ RC+  PG SGD+  DL+
Sbjct: 1736 VKCFDTFTNYSRCQCAPGFSGDYCSDLI 1763


>Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 106 SSHKHRFIK--DLFKNLQTNLASVHIA*N*QAARSY*CHLYNSKYENSFTDII 258
           S HK    K  D F  LQ N    + A    A +    H+YNS Y+NSF +++
Sbjct: 427 SQHKDELEKYADYFNCLQNNAYLKYKASLSIATKRISDHVYNSTYQNSFNNLL 479


>AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 106 SSHKHRFIK--DLFKNLQTNLASVHIA*N*QAARSY*CHLYNSKYENSFTDII 258
           S HK    K  D F  LQ N    + A    A +    H+YNS Y+NSF +++
Sbjct: 427 SQHKDELEKYADYFNCLQNNAYLKYKASLSIATKRISDHVYNSTYQNSFNNLL 479


>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
            protein T22B11.5 protein.
          Length = 1029

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 628  LPHPSNRNAL--LLHGRNRQGVVP-TRADSQEVLPPVITQIIICGFHFYYTML 479
            L HP  R+ +     G N Q V+P T A SQ   PP + +++ C    YY M+
Sbjct: 865  LRHPMARSPVEDFQSGSNFQRVIPETGAPSQN--PPDVKRVVFCTGKVYYDMV 915


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 347 PSHY*YEIYATKSSWPIP--MYHACTNFSNEI 436
           P H  Y IYAT + W I   M H+C + ++ I
Sbjct: 105 PYHSDYSIYATPTGWKISSRMNHSCIDMTDVI 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,895,693
Number of Sequences: 27780
Number of extensions: 308536
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)