Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021887
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.0  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   3.1  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   4.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.5  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   9.5  

>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 426 IGFVSQKIELHWKLAGVAWMCAVQD 500
           + FVS+K++   K  GV W+CAV++
Sbjct: 177 VDFVSKKLDGDGKEEGVLWICAVRN 201


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 80  DLLFSNKFMIKLILSFDWMKGC 145
           D+ FS  F I  ++ FDW K C
Sbjct: 388 DMYFSQLFKIFELMGFDWAKKC 409


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 370 FVRD*QVDWDCL*LTCLSSYPLVI 299
           F RD  +DW C    C + YP ++
Sbjct: 183 FTRDSSMDWSCNMTLCNTDYPYLV 206


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 134 MKGCQFFIVRRFIIDTASQTLRAFVLQM---PMVRQFCFLLACS 256
           M+G    I+  F      + L  FVL     P+V++FC  LACS
Sbjct: 331 MEGFSSTIIASFS-SLLKKLLTLFVLSFFVYPLVQEFCLFLACS 373


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 187 PNITSICVTNANGSSILLFAGLFSGH 264
           PN  +   TNA+GS   LF+GL S +
Sbjct: 117 PNAAATTTTNADGSDKGLFSGLTSSN 142


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 519 IFEMSILFCLARLIERSNNFGGL 587
           +F+  +LFC A L E++  F G+
Sbjct: 224 VFQSRLLFCTASLFEKTACFSGI 246


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 620 CILNINGPRIKQATKVIRSFNQSRETK 540
           C  + NGP+IKQA K  +  +   ET+
Sbjct: 276 CKFSSNGPKIKQAKKKQKRKSNKAETE 302


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -2

Query: 599 PRIKQATKV-IRSFNQSRETKKD*HLENNKVNNRILNRTHPRN 474
           P +    KV +R F Q    K D  LEN  ++    N T P N
Sbjct: 229 PEVVVKKKVTLREFFQKIGFKNDNQLENKAISEEEANSTEPPN 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,291
Number of Sequences: 5004
Number of extensions: 55383
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)