Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021887
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0017 + 12297539-12297697,12298191-12298229,12298457-122988...    30   1.9  
02_01_0545 + 3996568-3996645,3998061-3998168,3998409-3998493,399...    28   5.6  
11_03_0068 + 9564354-9565180,9566658-9568704                           27   9.9  
05_03_0340 + 12691974-12692155,12692248-12692312,12692816-126928...    27   9.9  
05_03_0007 - 7318113-7318292,7319984-7320046,7320138-7320304,732...    27   9.9  

>11_04_0017 +
           12297539-12297697,12298191-12298229,12298457-12298825,
           12298921-12299058
          Length = 234

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 181 RKPNITSICVTNANGSSILLFAGLFSGHMP 270
           ++ N+T +   N NG S  +F G+F GH P
Sbjct: 56  QQQNVTYLVPLNYNGRSDTVFCGVFDGHGP 85


>02_01_0545 +
           3996568-3996645,3998061-3998168,3998409-3998493,
           3998789-3999024,3999250-3999423,3999510-3999557,
           3999659-3999718,3999815-3999901,4000007-4000095,
           4000209-4000300,4001110-4001171,4001271-4001420,
           4001507-4001722
          Length = 494

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 426 FRPNRYSLMRKSGSTAG*TSFVIDKSTGTVYS*HALA 316
           F P R+S+ +K  S  G   F  D+S G +Y    LA
Sbjct: 390 FEPERFSVPKKDESIEGWAGFDPDRSPGAMYPNEILA 426


>11_03_0068 + 9564354-9565180,9566658-9568704
          Length = 957

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 80  DLLFSNKFMIKLILSF--DWMKGCQFFIVRRFIIDTASQTLRAFVLQMPMVRQFCFLLAC 253
           DL+ S   +   I SF  +++ GCQ  ++RR  +D      R  +L   MV      L  
Sbjct: 507 DLIISKSVVENFITSFSHNYLLGCQDKVIRRLSLDCRE---RDAILPATMVLSSARSLVV 563

Query: 254 SRGTCHVP 277
              T H+P
Sbjct: 564 YGSTEHIP 571


>05_03_0340 +
           12691974-12692155,12692248-12692312,12692816-12692861,
           12692959-12693057,12693722-12693755,12694489-12694618,
           12694795-12694855,12695495-12695591,12696843-12697022,
           12697120-12697233,12697283-12697396
          Length = 373

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 308 AGNTGCYRRNRARGMCPEN 252
           AG + C+RRN+ARG   EN
Sbjct: 180 AGESYCHRRNQARGCSVEN 198


>05_03_0007 -
           7318113-7318292,7319984-7320046,7320138-7320304,
           7320387-7320427,7320617-7320702,7321384-7321502,
           7321609-7321783
          Length = 276

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 86  LFSNKFMIKLILSFDWMKGCQFFIVRRFIIDTASQTLRA 202
           LF+   ++K+  S+DW K  +  I+ +F++D   +  RA
Sbjct: 188 LFTISVLVKM--SWDWRKILEVLILGQFVVDKVMEAARA 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,331
Number of Sequences: 37544
Number of extensions: 325027
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)