Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021887
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    29   2.9  
U23454-3|AAC46518.1|  192|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
 Frame = +3

Query: 234 FAFCWLVLGAHATCPISSITACIT-SG*ELRHVNYKQSQSTCQSRTKFNQPW---THFFA 401
           F+F W  L   A C  S +T  +  +   L    + +       +  + +PW   T +  
Sbjct: 447 FSFVWGALAVAAGCAGSIVTVYVLYAEYHLPADQFGKGSLLDFGKILYQKPWVRCTPYLI 506

Query: 402 *ANTC*GEIGFVSQKIELHWKLAGVAWMCA 491
                 G   F  +++ LHW LA V W+ A
Sbjct: 507 GLLVGYGLAVFGKRRVRLHWALAVVGWLIA 536


>U23454-3|AAC46518.1|  192|Caenorhabditis elegans Hypothetical
           protein C10A4.4 protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 231 NFAFCWLVLGAHATCPISSIT 293
           +F  CW +L  H TC    IT
Sbjct: 89  DFVICWFLLAIHITCTAGCIT 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,041
Number of Sequences: 27780
Number of extensions: 311649
Number of successful extensions: 737
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)