Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021886
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 48 7e-07
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 43 3e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 39 6e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 37 0.002
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 37 0.002
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.005
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.005
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.009
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 35 0.009
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.022
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.038
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.038
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 31 0.12
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.12
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.15
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.15
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.15
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.15
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.20
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 30 0.27
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.47
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.62
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.62
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 29 0.62
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 28 1.1
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.4
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 1.4
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.9
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 3.3
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 3.3
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 4.4
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 26 4.4
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 4.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.8
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom... 25 5.8
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 7.6
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.6
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 7.6
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 7.6
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 48.4 bits (110), Expect = 7e-07
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = +3
Query: 252 ELNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 428
ELN L+ G+ +I + + T +F+ NL + + F FG ++ C +
Sbjct: 140 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 199
Query: 429 V-------RNYGFVHLDATGDVNDAIKELNGMMVTD 515
+ YGFVH D+ N AI+ +NGM++ D
Sbjct: 200 AVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLND 235
Score = 35.1 bits (77), Expect = 0.007
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Frame = +3
Query: 288 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGF 446
+ E K K +F+ NL D+ ++ F FGT+ I+ + +GF
Sbjct: 349 RYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGF 408
Query: 447 VHLDATGDVNDAIKELNGMMVTDSP 521
V + N A+ E+N M+ P
Sbjct: 409 VCYTTPEEANKAVTEMNQRMLAGKP 433
Score = 28.3 bits (60), Expect = 0.82
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKE 491
T +++ NL + E +LF +FG + +V R +GFV+ A+ E
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 492 LN 497
LN
Sbjct: 321 LN 322
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
+FI NL D+ + L+ F +GT+ I+
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIM 396
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 43.2 bits (97), Expect = 3e-05
Identities = 13/56 (23%), Positives = 32/56 (57%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 500
T++FVG + + ++ + F+ +G +++C ++ +GFV ++ D D + + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQG 59
Score = 41.9 bits (94), Expect = 6e-05
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGRE 244
++F+G + + T D+ F+ YG +++C ++ +GFV +E+ + R+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARD 52
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 38.7 bits (86), Expect = 6e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+FIG L+ +TT+ LR FE++G V++C ++R+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
Score = 34.3 bits (75), Expect = 0.012
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+F+G L +T +R+ F++FG V++C ++R+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T K+FVG + E R F +FG V++ ++
Sbjct: 246 TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.7 bits (81), Expect = 0.002
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Frame = +3
Query: 321 STPTT---KIFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDA 461
STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSH 471
Query: 462 TGDVNDAIKELNGMM 506
+ AI LNG++
Sbjct: 472 PFEAVQAINTLNGVL 486
Score = 28.7 bits (61), Expect = 0.62
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 282 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 407
A++ + K++++ I+VGNL ++ ++ ELF+ FG
Sbjct: 3 ALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFG 44
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYG 172
I++GNL +DL LFE +G
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 36.7 bits (81), Expect = 0.002
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Frame = +3
Query: 261 GELVHGQAIKIEAAKSRKAPST---------PTTKIFVGNLTDKTRAPEVRELFQKFGTV 413
G + HG+ +K+ A+ P + + +F+GNL E+ E F KFG +
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 414 VECDIV--RNYGFVHLDATGDVNDAIK 488
I+ +N FVH ++ DAIK
Sbjct: 326 EHIKILSKKNIAFVHF---LNIRDAIK 349
Score = 30.7 bits (66), Expect = 0.15
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMEN 226
+FIGNL E ++ F K+G + I+ +N FVH N
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLN 343
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Frame = +3
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDA 482
P +FV L T+ ++ +F +FG ++ C ++R+ Y F+ D V A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 483 IKELNGMMVTDS 518
++ +++ DS
Sbjct: 302 YFKMQNVLIDDS 313
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.005
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 50 FFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHME 223
F+ + P + T +F+G LS +E +L+ LF+ +G +V I + GFV
Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346
Query: 224 NEQ 232
N Q
Sbjct: 347 NRQ 349
Score = 33.9 bits (74), Expect = 0.016
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELN 497
T + +FVG L+ E++ LFQ FG +V I + GFV AI +L
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 498 GMMVTDSP*RCSCRR 542
G + +S R S R
Sbjct: 360 GYPLGNSRIRLSWGR 374
Score = 31.5 bits (68), Expect = 0.088
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQ---------KFGTVVECDIVRNYGFVHLDATGDVNDAIKE 491
IFVG+L+ +V LF K T + ++ R YGFV D A+ E
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 492 LNGMMVTDSP*R 527
+ G + D P R
Sbjct: 248 MQGQICGDRPIR 259
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 34.7 bits (76), Expect = 0.009
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Frame = +3
Query: 159 SKNTVRS*NAISSEITVSCTWKTNKSAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTK 338
SK+T S N ++ + S N S + SE N + +A PT
Sbjct: 532 SKSTA-SLNTNNNGLRASTPEMANISTRSSSESNN--TNSWPTVGDATIENLTQHEPTHA 588
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMV 509
++VGNL A V F +GTV ++ ++ F++ D+ ++ELNG +
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGKRI 647
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 34.7 bits (76), Expect = 0.009
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDI----VR--------NYGFVHLDATGDVND 479
++FVG L+ T+ E+R LF+ GTV + I VR FV + DV+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 480 AIKELNGMMVTD 515
AI+ LNG + D
Sbjct: 105 AIETLNGKTLDD 116
Score = 34.3 bits (75), Expect = 0.012
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTV 178
F++F+G LS T ++++R LFE GTV
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTV 70
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 432 RNYGFVHLDATGDVNDAIKELNGMMVTD 515
R +GFV D + AI+E+NG V D
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGD 285
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.5 bits (73), Expect = 0.022
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKEL 494
+F+GNL + E+RE + FG + + IV RN FVH A++EL
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR--NYGFVHLDATGDVNDAIKEL 494
I++GN D ++E F++FG + + R N FV+ + +AI +
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVH 217
G + I+IGN D T L+ FE++G + + R N FV+
Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVN 455
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.038
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 455
+F+G +T R P +R +F++FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
Score = 29.9 bits (64), Expect = 0.27
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHM 220
+F+G ++ E LR +FE++G+V + NY GF+ M
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.7 bits (71), Expect = 0.038
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 494
+FV + + + E++++F KFGTV I+ R +GF+ + AI L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 495 N 497
N
Sbjct: 163 N 163
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 31.1 bits (67), Expect = 0.12
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 101 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVH-MENEQVGR 241
++F+G+L+ K+ ++ +L +F+ YG + + + NYGFV NE R
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCAR 412
Score = 28.3 bits (60), Expect = 0.82
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMV 509
+++F+G+L K+ + + ++F+ +G + + + NYGFV D A+ G V
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.1 bits (67), Expect = 0.12
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Frame = +3
Query: 255 LNGELVHGQAIKIEAAKSRKAPSTPT-TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
LN + G+ I++ A + +T +FVGNL + + F G +V+ V
Sbjct: 72 LNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQV 131
Query: 432 --------RNYGFVHLDATGDVNDAIKELNGMMVTDSP 521
+ YGFV D+ + AI+ +N + + P
Sbjct: 132 ARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKP 169
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.7 bits (66), Expect = 0.15
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +2
Query: 83 PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQ 232
P + IF+G L T L LF KYG V++C I+ + F+ +++Q
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQ 415
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 318 PSTPTTKIFVGNLTDKTRAPE--VRELFQKFGTVVECDIV 431
P IFVG L D + +LF K+G V++C I+
Sbjct: 360 PPIDPYSIFVGQL-DPVNCTHYLLVDLFSKYGKVIDCKII 398
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.7 bits (66), Expect = 0.15
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +3
Query: 288 KIEAAKSRKAPSTPTTK-IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYG 443
KIE P P + I+VGNL T + +LF G+V+ I + +G
Sbjct: 264 KIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFG 323
Query: 444 FVHLDATGDVNDAIKELNG 500
V + D +I++LNG
Sbjct: 324 VVQFENENDAASSIEKLNG 342
Score = 29.5 bits (63), Expect = 0.35
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
+++VGNL+ + R E++E + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
++++GNLS + +L+ + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.15
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 279 QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
Q I + ++ P PT ++FV N++ + ++R F+ FG V + D+ N
Sbjct: 77 QTINYDYNENSLGPEPPT-QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
++F+ N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.7 bits (66), Expect = 0.15
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
F++F+GNL + + L F +Y ++V+ +VR+
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD 64
Score = 29.1 bits (62), Expect = 0.47
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 494
++FVGNL + + + F ++ ++V+ +VR+ +GFV + A +E
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 495 NGMMVTDSP*RCS 533
NG + P + S
Sbjct: 91 NGKYIGSRPVKLS 103
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.20
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 345 VGNLTDKTRAPEVRELFQKFGTV 413
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 29.9 bits (64), Expect = 0.27
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 171 VRS*NAISSEITVSCTWKTNKSAANHSEL 257
VRS NA +I +S ++ NKSAA H EL
Sbjct: 803 VRSTNADMKKIKLSISFSQNKSAARHEEL 831
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.1 bits (62), Expect = 0.47
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRP----LFEKYGTVVE 184
+++ NL+DK + DLR LF YGTVV+
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVD 36
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.62
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTV 178
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 294 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 413
+ A + + P++ +FVGNL +T +++E F + G +
Sbjct: 215 KTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQI 254
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.62
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 241
T +F+G LS + L FE+YGT+V ++ + YG+V E + +
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Score = 25.8 bits (54), Expect = 4.4
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Frame = +3
Query: 321 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 476
S T +FVG L+ + + F+++GT+V ++ + YG+V +
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 477 DAI-----KELNGMMV 509
A+ KE++G MV
Sbjct: 319 AAVAANGTKEIDGRMV 334
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTV 178
+F+GNLS TE DL F G +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDI 392
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 0.62
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+F+ LS T E+D+ F +YG + +VRN
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRN 134
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGR 241
+FI NLS K T ++ LF +YG V + + R FV EN Q R
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDAR 64
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+F+ L+++ T +L FE+ G V + IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
+FV L ++ + E+ + F++ G V + IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTV 178
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 494
+FV NL +T+ ++ F G + +V N YGFV D A KEL
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 3.3
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTV 178
+ +FI N+ + +E D++ LF++Y +
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFI 99
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 416 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 321
D + K+ AD A+L +THE GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 559 PLPDTTRRQLHLHGL 515
PLPD T R+LHL+ L
Sbjct: 633 PLPDETTRRLHLNNL 647
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 4.4
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 81 CRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKS 236
CR+ VL T I ILD SK +V +A+S +T+ C K S
Sbjct: 236 CRSCVLIVGQRSTNSILLVYQILDGLSKKSVDYTDAVSLRMTLICLQKLEPS 287
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.8
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Frame = +3
Query: 105 SSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTN-----KSAANHSELNGEL 269
SSS T P +S T S ++ S TVS + T+ S+++ S
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
Query: 270 VHGQAIKI-EAAKSRKAPSTPTTKIFVGNLT 359
H ++ +++ S K+ S P + F N T
Sbjct: 398 SHSSSLSSHKSSSSSKSSSAPVSSAFYHNST 428
>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 5.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 188 DIVRNYGFVHMENEQVGREPFRT*RRVSSWAGDQNRSGQEPEGAVDANH*NIRG*F 355
DI NY F NE F RV++W+ + P+GA H N+ G F
Sbjct: 207 DISENYTFDAPANELYAT--FLDPARVAAWSRAPPQLDVRPQGAFSLFHGNVVGKF 260
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 72 NLKCR-APVLSKSSSGTFLIKPQKPILD 152
+L+C+ +PV+ +S +F K + PILD
Sbjct: 211 HLRCKTSPVIEESKEISFSYKDEHPILD 238
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 228 NKSAANHSELNGELVHGQAIKIEAAKSRKAPS 323
N+S+ EL+ ELV QA+K+ AAK +K S
Sbjct: 564 NQSSNWQDELS-ELVSEQAMKVGAAKRQKTQS 594
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
I++GNL ++ +F +FG V+ ++VR+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.0 bits (52), Expect = 7.6
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 3/127 (2%)
Frame = +3
Query: 45 CYSLYIVTHNLKCRAPVL-SKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTW 221
C SLY +H+ + R PV+ ++ + L+ Q + S N + ++ S S +
Sbjct: 4 CQSLYKFSHSFRKRIPVMFQRAQQKSSLLHTQNESSHQPSLNKLGGFSSASLNFNSSRS- 62
Query: 222 KTNKSAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP--EVRELF 395
TN S + L I + A + R A S VG K P E L
Sbjct: 63 STNDDQQTFSSQSDNL-PSSPITLPAKRGRSAASLKQLDNTVGFDVSKPSLPVFENSGLG 121
Query: 396 QKFGTVV 416
K+ T +
Sbjct: 122 SKYSTEI 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,518
Number of Sequences: 5004
Number of extensions: 43066
Number of successful extensions: 209
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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