Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021886
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 48 7e-06
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 46 2e-05
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 45 5e-05
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 42 3e-04
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 40 0.001
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 40 0.001
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 40 0.002
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 37 0.010
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 37 0.013
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 36 0.017
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 36 0.023
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 35 0.040
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 35 0.040
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 35 0.040
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.040
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 35 0.052
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.069
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.069
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.091
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 33 0.12
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.12
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 33 0.21
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.21
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 33 0.21
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.37
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 31 0.49
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_47771| Best HMM Match : Annexin (HMM E-Value=0) 30 1.1
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 30 1.1
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 30 1.1
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 30 1.5
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 30 1.5
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 29 2.6
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 3.4
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 3.4
SB_53618| Best HMM Match : DHquinase_I (HMM E-Value=6.1) 29 3.4
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 28 4.5
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_28079| Best HMM Match : MCPsignal (HMM E-Value=0.00064) 28 6.0
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_14134| Best HMM Match : Hormone_3 (HMM E-Value=2.3) 27 7.9
SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 306 SRKAPSTPTTKIFVGNL-TDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDA 482
++ P + +IF+GNL TDK ++ E+F + G V+ C + N+GFV + ++A
Sbjct: 37 NKNDPHSVRCRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGADEA 96
Query: 483 IKELNGMMV 509
+ + +G ++
Sbjct: 97 VAKEHGRII 105
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 101 KIFIGNLS-DKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
+IFIGNL+ DK DL +F ++G V+ C + N+GFV E E+
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEK 91
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKELNG 500
TTK++VGNL + E+ F+KFG + + + RN + FV + D +A++EL+G
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDG 62
Query: 501 MMVTD 515
V D
Sbjct: 63 ANVCD 67
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN---YGFVHMENEQVGREPFR 253
T K+++GNL ++L FEK+G + + + RN + FV E+ + E R
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVR 58
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 500
++++G L T +VR F+ +G + + ++ NYGFV + D +DA+ E NG
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDADDAVYECNG 58
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
++++G L TTE D+R F YG + + ++ NYGFV E+++
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDR 47
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +2
Query: 80 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREPFR 253
M GT ++F+G LS +T DL +F YG ++ CD+ YGF+ E+ + E R
Sbjct: 1 MASRGT-QLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFIEYEDPRDAEEAMR 57
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 497
T++FVG L+ +T+ ++ +F +G ++ CD+ YGF+ + D +A++ N
Sbjct: 6 TQLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFIEYEDPRDAEEAMRREN 60
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Frame = +3
Query: 306 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATG 467
S+ + S KIF+G L T +++ F ++GT+V+C I+ R +GFV +++
Sbjct: 41 SKMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSD 100
Query: 468 DVNDAIKE 491
VN+ +K+
Sbjct: 101 SVNEVLKK 108
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMEN 226
KIFIG L+ TTE L+ F ++GT+V+C I+ R +GFV E+
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYES 98
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 83 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 208
PG T +F+GN+ TT DL+ FE+YG V++ DI + G
Sbjct: 245 PGC-TRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPG 285
Score = 33.9 bits (74), Expect = 0.091
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 443
T +FVGN+ T +++E F+++G V++ DI + G
Sbjct: 248 TRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPG 285
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGT--VVECDIVRNYGFVHLDATGDVNDAIKELNG 500
+ ++++G L TR +V++ F +G + E + YGFV D + D DA+ E NG
Sbjct: 2 SNRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFDYSDDAEDAVYECNG 60
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQV 235
+IF+ + +TTE++LR FE+YG V E IVR+ Y F+ E+++V
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFESQEV 60
Score = 30.7 bits (66), Expect = 0.85
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 494
+IFV +T E+R F+++G V E IVR+ Y F+ ++ +V D +++
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFESQ-EVADGLRDN 67
Query: 495 NGMMVTD 515
G+ D
Sbjct: 68 KGLDFKD 74
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 500
+T+++ G L R ++ + + +G V E + YGFV D D +D + +LNG
Sbjct: 4 STRVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDDYRDADDCVYDLNG 60
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMEN 226
+++ G L E DL YG V E + YGFV ++
Sbjct: 6 RVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDD 47
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKELNGM 503
TK+++G+L D E+ F +G + + + RN + F D D DA++EL+G
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGR 91
Query: 504 MV 509
+
Sbjct: 92 YI 93
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 369 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 500
R +V + + +G + + + R YGFV D D DA+ +LNG
Sbjct: 701 RESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNG 744
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 83 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECD 190
P + + + NLS +T+ DL+ F KYG V D
Sbjct: 793 PVRTNYSVIVENLSSRTSWQDLKDYFRKYGKVTYAD 828
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 89 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-YGFVHMENEQV 235
+ + K+F+G + E DLRP+FE YG + E I+++ Y H ++ ++
Sbjct: 167 SNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKDDRKL 216
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+F+G +S E DLR +F +GT+ E ++RN
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+FVG ++ + ++R +F FGT+ E ++RN
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 89 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGF 211
TG ++F+GNL D E +++ +F+KYG V E I + GF
Sbjct: 50 TGRCRLFVGNLID-CDEEEMKEMFKKYGEVAEVFINKEKGF 89
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLD 458
T ++FVGNL D E++E+F+K+G V E I + +GF+ LD
Sbjct: 50 TGRCRLFVGNLIDCDEE-EMKEMFKKYGEVAEVFINKEKGFGFIRLD 95
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG------FVHLDATGDVNDAIKELN 497
+++VGNL R ++ ++F K+G + + D+ G FV + D DA+K +
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRD 321
Query: 498 G 500
G
Sbjct: 322 G 322
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 208
++++GNL E DL +F KYG + + D+ G
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRG 297
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 35.9 bits (79), Expect = 0.023
Identities = 11/33 (33%), Positives = 24/33 (72%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+F+ L+ TT+ DL +F ++GT++ C+++R+
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRD 154
Score = 34.7 bits (76), Expect = 0.052
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +3
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDA 482
P +FV L T ++ +F +FGT++ C+++R+ Y F+ + D A
Sbjct: 118 PDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERA 177
Query: 483 IKELNGMMVTD 515
+++ +++ D
Sbjct: 178 YFKMDNVLIDD 188
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+++GNL T +DL +FE+YG VV+ I+R+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRD 44
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +3
Query: 321 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVN 476
S T + + + +++++F G V C ++R+ Y FV+ D D N
Sbjct: 23 SDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDAN 82
Query: 477 DAIKELNGMMVTDSP*RCSCRR 542
A++E+NG + + + S R
Sbjct: 83 KAVREMNGARLQNKTLKVSFAR 104
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTV--VECDIVRNYGFVHMEN 226
IF+ L + T L LF YG + +E + + YGFV+M N
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSN 316
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 219 WKTNKSAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ 398
+K ++A NGE + G I+++ A + KA + +F+GNL +RELF
Sbjct: 19 YKAAENANQAIASNGEEIDGFHIRVDLASNDKAHDHQRS-VFIGNLPFDIEEEPLRELFT 77
Query: 399 KFGTVVECDIVRN 437
G V ++R+
Sbjct: 78 TCGNVESVRLIRD 90
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 35.1 bits (77), Expect = 0.040
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVE 184
++FIGNL +AD+ +F KYGT++E
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILE 385
Score = 33.9 bits (74), Expect = 0.091
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 306 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 419
+R AP + ++F+GNL + +V E+F K+GT++E
Sbjct: 350 ARSAPDSH--QVFIGNLPSGVKDADVNEVFSKYGTILE 385
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 35.1 bits (77), Expect = 0.040
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
K+F+G LS +TT+ L+ F KYG +V DI
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDI 60
Score = 34.3 bits (75), Expect = 0.069
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 ELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 428
E V+G +++ K+R K+FVG L+ +T ++E F K+G +V DI
Sbjct: 5 EAVNGYIGTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDI 60
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 297 AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQK-FGTVVECDIVRNY 440
AA K P KIFVG L +T ++RE F K + V E + + +
Sbjct: 91 AAPIGKPPHLRVKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEH 139
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 35.1 bits (77), Expect = 0.040
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Frame = +3
Query: 204 TVSCTWKTNKSAANH-SELNGELVHGQAIK--IEAAKSRKAPS-TPTTKIFVGNLTDKTR 371
T S +K+ K A ++LNG+ + G +K IE+ +P + +++ + NL
Sbjct: 200 TASLLFKSYKDARQAVAKLNGKTLKGVKVKAVIESKDKSSSPKGSKKSRLIIRNLAFNCT 259
Query: 372 APEVRELFQKFGTVVECDIV------RN----YGFVHLDATGDVNDAIKELNGMMVTDSP 521
++E F FG V E + RN +GFV D A++E+N + P
Sbjct: 260 EAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNAKKILGRP 319
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
+FI NLS +T+ ++ LF+++G + C +V
Sbjct: 418 VFIRNLSFDSTQKNITNLFKQFGDIAYCKVV 448
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 34.7 bits (76), Expect = 0.052
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 270 VHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR--NYG 443
+ GQ I K S TT+++VG L PE+ F +FG + D + ++
Sbjct: 297 MQGQCIGRNHIKIGYGRSQQTTRLWVGGLGPWISIPELEREFDRFGAIRRIDYRKGGDHA 356
Query: 444 FVHLDATGDVNDAIKELNGMMVTD 515
++ D+ + A +E+ G + D
Sbjct: 357 YILYDSLDAASVAAREMRGFQMGD 380
Score = 33.9 bits (74), Expect = 0.091
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 199
T +F+GNL + DLR FEK+G V++ DI R
Sbjct: 236 TRTLFVGNLETGISCQDLRLSFEKFGVVLDVDIKR 270
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 434
T +FVGNL ++R F+KFG V++ DI R
Sbjct: 236 TRTLFVGNLETGISCQDLRLSFEKFGVVLDVDIKR 270
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 34.7 bits (76), Expect = 0.052
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = +3
Query: 282 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------- 437
++ + S P +P KIF+G L + +V+EL FG + ++V++
Sbjct: 657 SVHVPGVVSTVVPDSPH-KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKG 715
Query: 438 YGFVHLDATGDVNDAIKELNGMMVTD 515
Y F G + AI+ LNGM + D
Sbjct: 716 YAFCEYVDLGITDVAIQGLNGMQLGD 741
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 119 LSDKTTEADLRPLFEKYGTVVECDIVRNY 205
LS TTE DLRP+FEKYG V IV ++
Sbjct: 188 LSLYTTERDLRPVFEKYGPVEAIQIVYDH 216
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 34.3 bits (75), Expect = 0.069
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
K+FVGN+ K RA E+++ F FG VV I+
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQII 111
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
K+F+GN+ K +L+ F +G VV I+
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQII 111
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 34.3 bits (75), Expect = 0.069
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +3
Query: 288 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGF 446
+IE + + +++ NL D +RE F +GT+ ++++ +GF
Sbjct: 197 EIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGF 256
Query: 447 VHLDATGDVNDAIKELNGMMVTDSP 521
V + + A+ E+NG ++ P
Sbjct: 257 VCFSSPEEATKAVTEMNGRILISKP 281
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKE 491
T ++V N D +++E+ + G +V ++ + +GFV + + +A+
Sbjct: 109 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNV 168
Query: 492 LNG 500
LNG
Sbjct: 169 LNG 171
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 33.9 bits (74), Expect = 0.091
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
+I+I ++ E D++ +FE +G VV C + + YGF+ EN+Q
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQ 251
Score = 32.7 bits (71), Expect = 0.21
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Frame = +3
Query: 252 ELNGELVHGQAIKIEAAKS--RKAP--------STPTTKIFVGNLTDKTRAPEVRELFQK 401
++NG L+ G+ IK+ + + AP + +I++ ++ +++ +F+
Sbjct: 162 QMNGVLLGGRNIKVGRPSNVPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEA 221
Query: 402 FGTVVECDIVRN--------YGFVHLDATGDVNDAIKELN 497
FG VV C + + YGF+ + NDAI +N
Sbjct: 222 FGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
I++ N+ +E L+ +F KYG + + +R+YGFV+ +
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRE 46
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMV 509
I+V N+ +++ +F K+G + + +R+YGFV+ AI +NG +
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRESAVQAIDGINGAYI 60
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +3
Query: 270 VHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI---VRNY 440
+ G+ ++ + ++ + P K+FVG L + T + E F +FG V + I R++
Sbjct: 179 IQGRLCEVRLPRPKEELNVPK-KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHF 237
Query: 441 GFVHLDATGD-VNDAIKELN 497
GFV + + V+ A + +N
Sbjct: 238 GFVTFASVANCVSIAFENMN 257
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI---VRNYGFV 214
K+F+G L + TTE L F ++G V + I R++GFV
Sbjct: 200 KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFV 240
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Frame = +2
Query: 74 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI--------VRNYGFVHMENE 229
+K+ G + + L TTE++++ F ++G + C++ R +GFV + +
Sbjct: 107 TKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKD 166
Query: 230 QVGREPFRT*RRV 268
+ + T R+
Sbjct: 167 EDAKNVLSTSHRI 179
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYG----TVVECDIV----RNYGFVHMENEQVGR 241
K+F+G L+ +TT LR FE YG VV CD R +G+V + +V R
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTR 69
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 491
K+++GNL + E+ + F++FG V + DI+R+ +GFV L + + AI++
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 492 LN 497
+N
Sbjct: 69 MN 70
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K++IGNL+ + E ++ FE++G V + DI+R+
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRD 42
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +3
Query: 300 AKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHL 455
A+ K P PT +++VG+L V+ +F+ FGTV ++ + YGFV
Sbjct: 232 AERLKQPLGPT-RLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQF 290
Query: 456 DATGDVNDAIKELNGMMVTDSP 521
A++++NG + P
Sbjct: 291 REAEAAKRAMEQMNGFELAGRP 312
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 241
G ++++G+L TEA ++ +FE +GTV ++ + YGFV + +
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAK 297
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTV-VECDIVRNYGFVHMENEQVGREPFRT 256
K+FIG L+ TTE DL+ F YG V V+ R G ++ Q+G P T
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMVEVKKAEYRERG-QQSKDHQMGGNPLAT 254
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
G +++ NLS T ADL+ F +YG VV IV N
Sbjct: 347 GGKSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTN 383
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 303 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 458
+S P + +F+ +L + ++ + FQ FGTV+ + + +GFV D
Sbjct: 267 ESHYTPGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYD 326
Query: 459 ATGDVNDAIKELNGMMV 509
+AI+ +NG +
Sbjct: 327 NVMSAQNAIQHMNGFQI 343
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 83 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
PG +FI +L + T+ADL F+ +GTV+ +
Sbjct: 272 PGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKV 308
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGRE 244
+F+G L+ T E L+ FE++G V I+ RNYGFV +++ +E
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFVLFKDDGPSKE 135
Score = 30.7 bits (66), Expect = 0.85
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKE-- 491
+FVG L T +++ F++FG V I+ RNYGFV G + +K+
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFVLFKDDGPSKEVLKKSH 141
Query: 492 -LNGMMV 509
+NG V
Sbjct: 142 VINGKTV 148
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 68 P*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
P + G +F+ NLS+ T E D+ F YG V + I+
Sbjct: 309 PNEEKQGVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHIL 351
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQ 232
I++G+L+ T+ L+ +FE++GT+ D++ R ++ ME +
Sbjct: 543 IWVGHLAKIVTQDTLQGIFEEHGTITSIDLIPPRGCAYIQMEKRE 587
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+++ N+ + EA+ R FE YG +V C ++R+
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRD 167
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +3
Query: 294 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFV 449
E +++++ +T ++TD+T R +F+ ++ C IVR+ +GFV
Sbjct: 38 EPQEAQESKTTLIVNYIPQDMTDQT----FRMMFEAVASLNNCKIVRHKPSGWSYGFGFV 93
Query: 450 HLDATGDVNDAIKELNGMMV 509
+ T D AI +LNG +
Sbjct: 94 DYNTTEDAQKAIDKLNGFTI 113
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVH 217
+++ NLS TE L+ + +YG V +++Y FVH
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVH 368
Score = 30.7 bits (66), Expect = 0.85
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 500
+++ NL+ +++E + ++G V +++Y FVH AI+E +G
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVHFTERDHALKAIEETDG 384
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +2
Query: 77 KMPGTGTFKI----FIGNLSDKTTEADLRPLFEKYGTVVE 184
K PGTG+ K+ FIG + E +L P+FE+ G + +
Sbjct: 141 KPPGTGSEKVCSQVFIGKVPRDCFEDELIPVFEECGHIYD 180
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQ 232
+++GNL + +L+ +F +YG+++E + + Y F++ E+
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFINARGEK 661
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Frame = +3
Query: 303 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN------YGFVHLDAT 464
++R P ++VGNL K + +F K VV C ++ + Y FV +
Sbjct: 359 RARYFPEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETH 418
Query: 465 GDVNDAIKELNGMMVTD 515
D +A ++ V D
Sbjct: 419 ADAQEAKFRMDQRTVMD 435
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+++GNL K T+ + +F K VV C ++ +
Sbjct: 371 LYVGNLDPKCTQELICSIFNKIAKVVRCKMINS 403
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.9 bits (69), Expect = 0.37
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = +3
Query: 270 VHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV-------ECDI 428
V+G+ I++ A + +F+GNL + + + F FG ++ + D
Sbjct: 79 VYGKPIRVNKASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDT 138
Query: 429 VRNYGFVHLD-ATGDVND-AIKELNGMMVTDSP 521
+ GF ++ A+ D +D AI+ +NG + + P
Sbjct: 139 GNSKGFAFINFASFDASDAAIEAMNGQYLCNRP 171
Score = 30.7 bits (66), Expect = 0.85
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 494
I+VG L +K + ELF + G VV + ++ YGFV D + AIK +
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 495 NGMMVTDSP*R 527
N + V P R
Sbjct: 75 NMIKVYGKPIR 85
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 31.5 bits (68), Expect = 0.49
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 303 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 428
+ +++P+ TK++V +LT V+E+F +G V D+
Sbjct: 1147 RRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDL 1188
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 83 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
PG +FI +L + T+ADL F+ +GTV+ +
Sbjct: 224 PGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKV 260
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRA----PEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV 473
+ K+F+ T+ ++ + + FQ FGTV+ + + +GFV D
Sbjct: 257 SAKVFIDKQTNMSKCFGECCRLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSA 316
Query: 474 NDAIKELNGMMV 509
+AI+ +NG +
Sbjct: 317 QNAIQHMNGFQI 328
>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 31.1 bits (67), Expect = 0.64
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +3
Query: 39 IYCYSLYIVTHNLKCRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCT 218
IYC S + V + APVL K + T +I+P P+ ++ N AI E+ +S T
Sbjct: 186 IYCASKFAVEGYAEAMAPVLGKFNIKTTIIEP-GPVATNFASNA----KAIRDEVDISGT 240
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 497
+FV NL + E+ ELF K G V + +V N YG+V + + A+ L+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
Length = 529
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 378 EVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVT 512
++R L+Q + V +CDI+ + + TGD +DA+K + GM+ +
Sbjct: 436 QLRALYQAYQHVAKCDILET---IDDELTGDYHDAVKAI-GMLAS 476
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 68 P*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 208
P +P +F+GNLS E L FE+ G C ++ G
Sbjct: 170 PKKTVPAKEEMSVFLGNLSFDADEETLAAFFEEKGLSATCRVITQEG 216
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
F+IF G+L + T+ L F KY + ++ IVR+
Sbjct: 217 FRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRD 251
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 491
+IF G+L + + F K+ + ++ IVR+ YGFV D A++E
Sbjct: 218 RIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMRE 277
Query: 492 LNGMMVTD 515
+N + D
Sbjct: 278 MNVLSFAD 285
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTV 413
T T KIF+G L+ T ++++ F +FG V
Sbjct: 180 TTTKKIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/104 (20%), Positives = 39/104 (37%)
Frame = +3
Query: 78 KCRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKSAANHSEL 257
K A + + + TFL + S +T + + +++ T + + T K+ S
Sbjct: 417 KATASTQTAAEANTFLSTQKTDATTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSSTS 476
Query: 258 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 389
+ + K+ PST TTK + T +P E
Sbjct: 477 TTKAT--TTLSTSTTKATTTPSTSTTKATTSTAVEATTSPAATE 518
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +3
Query: 381 VRELFQKFGTVV------ECDIVRNYGFVHLDATGDVNDAIKELNG 500
+R++F KFG +V E D+ R Y F+ D A+K NG
Sbjct: 94 IRKVFSKFGQIVTEHYPMEKDLTRGYIFLEFSNASDAVRAVKTANG 139
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Frame = +2
Query: 80 MPGTGTFKI-----FIGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHM 220
+P TG K+ +I L TT+ DL L KYGT++ + ++ + YGFV
Sbjct: 89 LPDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDF 148
Query: 221 EN 226
E+
Sbjct: 149 ES 150
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTV 178
K +IGNL K EADL+ F +Y V
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVV 256
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.1 bits (62), Expect = 2.6
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Frame = +3
Query: 168 TVRS*NAISSEITVSCTWKTNKSAANHSELNGEL--VHGQAIKIEAAKS-----RKAPST 326
T+R+ N + SE+ S + + KS + L +L + G I + + A S
Sbjct: 465 TIRTWNLLPSEVVESSSIDSFKSKTGNDWLFRQLPSLQGPCIAFWVFQEVNEGFKMAASF 524
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAI 485
P +++G L++ + ELF KFG V + I+R+ GFVH ++ A
Sbjct: 525 P---VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAAN 581
Query: 486 KELNG 500
+NG
Sbjct: 582 VGMNG 586
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Frame = +3
Query: 303 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 458
+S A +FVGN+ + +++E+F + G V+ +V + YGF
Sbjct: 15 QSSGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYK 74
Query: 459 ATGDVNDAIKELNG 500
A++ LNG
Sbjct: 75 DQETALSAMRNLNG 88
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGD 470
T TK+FVG + ++ +R+ F +FG + E ++++ YGFV + AT D
Sbjct: 7 TKFTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTM-ATSD 62
>SB_53618| Best HMM Match : DHquinase_I (HMM E-Value=6.1)
Length = 303
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -3
Query: 319 GAFRLLAASILIACP*TNSPLSSEWFAADLFVFHVHETVISDDIAFYDRTVFFE*RSKIG 140
G F + ++ P S L S +A L + +H+ ISDD+ + T+ E G
Sbjct: 234 GPFTDIILLAQVSSPIKRSHLLSSSYARTLLNYALHDVTISDDVIYPSDTIRPEDGHSSG 293
Query: 139 FC 134
C
Sbjct: 294 IC 295
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
G + + NL+ +TT DL+ +F+KYG + + I R+
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRD 50
>SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+ I NL E DL+ L + YG V+ C+I R+
Sbjct: 121 LIIQNLPKGIQEKDLKELLQLYGNVLVCNIERD 153
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
K+F+G L++ TTE +R F+ + E D+
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSFCEGSEADV 39
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -2
Query: 548 HDSSTTAPSWAVRHHHTVQLF-DSVVHIARRVQMHEAVVTHDIALDDRPELLKQLADFGR 372
H +ST V+HH L DS I+ + +A+ DR E FG+
Sbjct: 1448 HQASTADYHQPVKHHKQPALERDSGEEISTPSRPASKKGVDRVAIKDRAEAEMS---FGQ 1504
Query: 371 ARLVR*ITHEYFSGWRRRR 315
R + E+F WRRR+
Sbjct: 1505 KRTIAQSPDEHFQEWRRRQ 1523
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTV----VECD----IVRNYGFVHLDATGDVNDAIKEL 494
+FV N+ ++ + ++ ELF +G + V D ++ Y V + + A++ L
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 495 NG 500
NG
Sbjct: 355 NG 356
>SB_28079| Best HMM Match : MCPsignal (HMM E-Value=0.00064)
Length = 257
Score = 27.9 bits (59), Expect = 6.0
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Frame = +3
Query: 192 SSEITVSCTWKTNKSAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTR 371
+ EIT S T + N S A ++ GE ++ +I + ST G +TD T
Sbjct: 153 TGEITDS-TGEINDSTAELTDSTGE-INDSTGEITNSTGEITNSTGEITDSTGEITDSTG 210
Query: 372 --APEVRELFQKFGTVVEC--DIVRNYGFVHLDATGDVNDAIKEL 494
E+ G + + +I + G + D+TG++ND+ EL
Sbjct: 211 EITDSTGEITDSTGEITDSTGEITDSTGEI-TDSTGEINDSTAEL 254
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFV 214
+++G L K TE DLR F ++G + +V +N FV
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFV 344
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 2 WSLFGVHIFNLCYILLFFVHSNP*SKMPGTG 94
W + +H+ N Y+L F S P ++ +G
Sbjct: 212 WGILSLHLINFIYLLFFLPESMPKQRIEQSG 242
>SB_14134| Best HMM Match : Hormone_3 (HMM E-Value=2.3)
Length = 683
Score = 27.5 bits (58), Expect = 7.9
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 363 KTRAPEVRELFQKFGTVVECDIVRNYGF-VHL----DATGDVNDAIKELNGMM-VTDSP* 524
KTR +VRE G D+VR YGF H+ D G + +L G++ +T+
Sbjct: 359 KTREAKVREDSDFGGASDAIDVVRKYGFPTHVYRIADVVGRPLSEVLQLTGVIQLTEWEF 418
Query: 525 RCSCRRVVSGSG 560
+C SG G
Sbjct: 419 SEACHPYTSGRG 430
>SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 387 ELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIK 488
E+F +G + C ++++YGFV + + ND ++
Sbjct: 745 EVFNTYGQLANCHLLQSYGFV--EGPDNPNDTVE 776
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,884
Number of Sequences: 59808
Number of extensions: 328337
Number of successful extensions: 1010
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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