Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021886
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.4  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   6.4  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   6.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.5  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 54  LYIVTHNLKCRAPVLSKSSSGTFLIK 131
           ++I TH L C+  +  K+ S  +L++
Sbjct: 34  MHIRTHTLPCKCHLCGKAFSRPWLLQ 59


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 547 TTRRQLHLHGLSVTIIP 497
           T+  +LH+HG  V  IP
Sbjct: 92  TSLHELHVHGCKVLRIP 108


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 12 LVFIFLTCVIYCYSLYIVTHNLKC 83
          +  + L CVIYC  ++  T  + C
Sbjct: 3  ITIVSLLCVIYCALVHADTVAILC 26


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 12 LVFIFLTCVIYCYSLYIVTHNLKC 83
          +  + L CVIYC  ++  T  + C
Sbjct: 3  ITIVSLLCVIYCALVHADTVAILC 26


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +3

Query: 42  YCYSLYIVTHNLKCRAPVLSKSSSGTFLIKPQKPIL 149
           YCY+L     + +C A  + ++   ++L + +  +L
Sbjct: 220 YCYNLTPNQPSAQCEATTMQENDKMSWLFESEDVLL 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,594
Number of Sequences: 438
Number of extensions: 2897
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)