Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021886
(561 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 47 1e-05
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 47 1e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 46 1e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 46 1e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 46 2e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 46 2e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 44 7e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 44 7e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 43 1e-04
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 43 2e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 43 2e-04
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 43 2e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 42 2e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 42 3e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 41 7e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 41 7e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 41 7e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 41 7e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 40 0.002
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 40 0.002
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 39 0.002
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 39 0.002
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 39 0.003
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 39 0.003
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 39 0.003
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 39 0.003
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 39 0.003
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 38 0.003
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 38 0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.003
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 38 0.003
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.003
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 38 0.003
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 38 0.005
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 38 0.005
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 38 0.005
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 38 0.005
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 37 0.008
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 37 0.011
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 37 0.011
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 37 0.011
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 37 0.011
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 37 0.011
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 37 0.011
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 37 0.011
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 37 0.011
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 36 0.014
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.014
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 36 0.014
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 36 0.014
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 36 0.014
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.019
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.019
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 36 0.019
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 36 0.019
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 36 0.019
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 36 0.019
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.019
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 36 0.019
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.019
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.019
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.019
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 36 0.019
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.024
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.024
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 36 0.024
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 35 0.032
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 35 0.032
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 35 0.032
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 35 0.032
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 35 0.032
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 35 0.032
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.032
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 35 0.032
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 35 0.032
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 35 0.032
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 35 0.032
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 35 0.043
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 35 0.043
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 35 0.043
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 35 0.043
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 34 0.057
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 34 0.057
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.075
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.075
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.075
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.075
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.075
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.075
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.099
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.099
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 33 0.099
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.13
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.13
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 33 0.13
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.13
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 33 0.13
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 33 0.13
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.13
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.13
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 33 0.17
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.17
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.17
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.17
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.17
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.17
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 32 0.23
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 32 0.23
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 32 0.23
At1g72880.2 68414.m08430 acid phosphatase survival protein SurE,... 32 0.23
At1g72880.1 68414.m08429 acid phosphatase survival protein SurE,... 32 0.23
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 32 0.30
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.30
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.30
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 32 0.30
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 32 0.30
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 32 0.30
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 32 0.30
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 31 0.40
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 31 0.40
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.40
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 31 0.53
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 31 0.53
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.53
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.53
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 31 0.53
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 31 0.53
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 31 0.53
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.53
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 31 0.70
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 31 0.70
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 31 0.70
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 31 0.70
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 31 0.70
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 30 0.92
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 30 0.92
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 30 1.2
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 30 1.2
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 30 1.2
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 29 1.6
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 29 1.6
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 29 1.6
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 29 1.6
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 29 1.6
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 2.1
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 2.8
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 2.8
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 2.8
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.8
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 2.8
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 2.8
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ... 29 2.8
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 29 2.8
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 3.7
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 28 3.7
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 28 3.7
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 4.9
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ... 28 4.9
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 28 4.9
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 28 4.9
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 6.5
At4g01070.1 68417.m00145 UDP-glucoronosyl/UDP-glucosyl transfera... 27 6.5
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 27 6.5
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 27 6.5
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 27 6.5
At5g53890.1 68418.m06703 leucine-rich repeat transmembrane prote... 27 8.6
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 27 8.6
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 27 8.6
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 500
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDG 66
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMEN 226
G ++++G LS +T DL LF +YG V + D+ R+Y FV +
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSD 53
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 500
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDG 66
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV 214
G ++++G LS +T DL LF +YG V + D+ R+Y FV
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFV 49
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Frame = +3
Query: 258 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 431
N L++G+ I++ + ++ A +FV NL + ++++F+KFG +V C +
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT 145
Query: 432 ------RNYGFVHLDATGDVNDAIKELNGMMVTD 515
R YGFV + + AI+ LN +V D
Sbjct: 146 LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVAD 179
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREPF 250
G +F+ NL + T A L+ +F+K+G +V C + R YGFV E E
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 251 RT 256
+T
Sbjct: 170 QT 171
Score = 32.3 bits (70), Expect = 0.23
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Frame = +3
Query: 255 LNGELVHGQAI---KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 425
LN +V + I K R P T +++ NL +RE F +FG +V
Sbjct: 172 LNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLA 231
Query: 426 IV-------RNYGFVHLDATGDVNDAIKELNG 500
I R Y FV+ D D A + +NG
Sbjct: 232 IAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKE 491
+ I+V N+ E+R+ F + GT+ ++ + +GFV + DA+K
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 492 LNGMMVTDSP 521
+G M P
Sbjct: 364 FHGQMFHGKP 373
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Frame = +3
Query: 252 ELNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 428
+LN ++G+ I+I +++ A + +FV NL + E F GT+V C +
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 429 V-------RNYGFVHLDATGDVNDAIKELNGMMVTD 515
R YGFV D +AI++LNG ++ D
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLND 201
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 497
++V NL D ++RELF +FGT+ C ++R+ GFV A + + + E+N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 498 GMMVTDSP 521
G MV P
Sbjct: 390 GKMVGGKP 397
Score = 38.3 bits (85), Expect = 0.003
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Frame = +3
Query: 225 TNKSAANHSE-LNGELVHGQAIKI-----EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 386
T SA N E LNG++++ + I + + + A T ++V NL++ T E++
Sbjct: 183 TEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELK 242
Query: 387 ELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVTD 515
F ++G++ ++R+ +GFV+ + D A++ LNG D
Sbjct: 243 TTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDD 292
Score = 33.9 bits (74), Expect = 0.075
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQ 232
+++ NLS+ TT+ +L+ F +YG++ ++R+ +GFV+ EN +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPE 276
Score = 30.3 bits (65), Expect = 0.92
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Frame = +2
Query: 44 LLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RN 202
++ +S+ S +G +F+ NL L F GT+V C + R
Sbjct: 116 MIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRG 175
Query: 203 YGFVHMENE 229
YGFV + E
Sbjct: 176 YGFVQFDTE 184
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 497
+FVGN +TR ++ LF K+G V D+ Y FV+ + D DAI++L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREPFR 253
+F+GN +T ++DL LF+KYG V D+ Y FV+ E+E+ + R
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIR 53
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 95 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
T +F+ N +T E D+ FE YG V I RN+ FV E ++
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQE 138
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 45.6 bits (103), Expect = 2e-05
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Frame = +3
Query: 159 SKNTVRS*NAISSEITVSCTWKTNKSAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTK 338
S + R+ +A++ + W K A SE EL K E + A + +
Sbjct: 274 SDDAARAVDALNGKTFDDKEWFVGK-AQKKSERETELKQ----KFEQSLKEAADKSQGSN 328
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 497
++V NL + ++RE F FGT+ C ++R+ GFV + AI E+N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 498 GMMVTDSP 521
G M+ P
Sbjct: 389 GKMIVTKP 396
Score = 44.8 bits (101), Expect = 4e-05
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Frame = +3
Query: 249 SELNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 425
+ELN ++G+AI++ + + + IF+ NL + E F FG ++ C
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 426 IV-------RNYGFVHLDATGDVNDAIKELNGMMVTD 515
+ + YGFV D AI +LNGM++ D
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLND 200
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Frame = +3
Query: 252 ELNGELVHGQAIKIE--AAKSRKAPS---TPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 416
+LNG L++ + + + K ++ PS T ++V NL++ E+ ++F +FG
Sbjct: 192 KLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTT 251
Query: 417 ECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVTD 515
C I+R+ +GFV+ + + D A+ LNG D
Sbjct: 252 SCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDD 291
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +3
Query: 297 AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 452
AA + A TT ++VG+L ++ E F + G VV + R+ YG+V+
Sbjct: 33 AAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVN 92
Query: 453 LDATGDVNDAIKELNGM 503
D + A+ ELN M
Sbjct: 93 YATPQDASRALNELNFM 109
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.0 bits (99), Expect = 7e-05
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Frame = +3
Query: 243 NHSELNGELVHGQAIKIEAAKSRKAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTVV 416
N +LNG L+ ++ +AP P +++VGNL + +LF + G VV
Sbjct: 212 NRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV 271
Query: 417 ECDIV--------RNYGFVHLDATGDVNDAIKELNG 500
E +V R +GFV + ++N+AI L+G
Sbjct: 272 EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307
Score = 32.3 bits (70), Expect = 0.23
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAIKE 491
K+FVGNL + + LF++ GTV E D R +GFV + + + A+++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 492 LN 497
N
Sbjct: 211 FN 212
Score = 30.7 bits (66), Expect = 0.70
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN 226
F++++GNL L LF ++G VVE +V R +GFV M +
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+F+GNL+ L LFE+ GTV +++ N
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 44.0 bits (99), Expect = 7e-05
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Frame = +3
Query: 222 KTNKSAANHSELNGELVHGQAIKI-------EAAKSRKAPSTPTTKIFVGNLTDKTRAPE 380
K + A +LNG L++ + + + E A+ P+ T ++V NL + E
Sbjct: 185 KEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDE 244
Query: 381 VRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVTD 515
+R+ F KFG + ++R+ +GFV+ + T A++++NG+ + D
Sbjct: 245 LRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGD 296
Score = 40.3 bits (90), Expect = 9e-04
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Frame = +3
Query: 306 SRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHL 455
S + PST + IF+ NL + E F FGT++ C + + YGFV
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQF 183
Query: 456 DATGDVNDAIKELNGMMVTD 515
+ AI +LNGM++ D
Sbjct: 184 EKEESAQAAIDKLNGMLMND 203
Score = 35.1 bits (77), Expect = 0.032
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +3
Query: 288 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGF 446
K E + + + +++ NL D +++E+F ++G V ++ R +GF
Sbjct: 317 KFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGF 376
Query: 447 VHLDATGDVNDAIKELNGMMVTDSP 521
V + A+ E+NG M+ P
Sbjct: 377 VAYSNPEEALRALSEMNGKMIGRKP 401
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +2
Query: 41 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------R 199
I + + +P +++ G G IFI NL L F +GT++ C + +
Sbjct: 119 IRIMLSNRDPSTRLSGKGN--IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK 176
Query: 200 NYGFVHMENEQ 232
YGFV E E+
Sbjct: 177 GYGFVQFEKEE 187
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.6 bits (98), Expect = 9e-05
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TKIFVGNLT +T A ++R F++FG VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2
Query: 89 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
T KIF+GNL+ +TT DLR FE++G VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +3
Query: 345 VGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNG 500
V NL++ TR P++ ELF+ FG V C + R +GFV + D AI +LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREPFR 253
+F GN E+DL LF KYG V D+ + FV+ME+E+ + R
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIR 53
Score = 40.3 bits (90), Expect = 9e-04
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 497
+F GN R ++ LF+K+G V D+ + FV+++ D DAI+ L+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 104 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
+F+ N + T DL FE YG +V I RN+ F+ E ++
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQE 141
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREPFR 253
+F GN E+DL LF KYG V D+ + FV+ME+E+ + R
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIR 53
Score = 40.3 bits (90), Expect = 9e-04
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 497
+F GN R ++ LF+K+G V D+ + FV+++ D DAI+ L+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 104 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
+F+ N + T DL FE YG +V I RN+ F+ E ++
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQE 141
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIK 488
++VGN TR ++ LF KFG V D+ Y FV+ + D DAI+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREPFR 253
+++GN T +DL LF K+G V D+ Y FV+ E+E+ + R
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 327 PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGM 503
PT +FV N +TR ++ F+ +G V+ + RN+ FV D A+ +
Sbjct: 93 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNS 152
Query: 504 MVTD 515
+ D
Sbjct: 153 KLLD 156
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 95 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
T +F+ N +T E D+ FE YG V+ + RN+ FV ++
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQE 140
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREPFR 253
+F GN E DL LF KYG V D+ + FV+ME+E+ + R
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIR 53
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 497
+F GN R ++ LF+K+G V D+ + FV+++ D DAI+ L+
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
Score = 33.5 bits (73), Expect = 0.099
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 104 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
+F+ N +D T DL FE YG +V I RN+ F+ E ++
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQE 142
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 497
++V NL D ++ ELF +FGT+ C ++ + GFV + + + A+ ++N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 498 GMMVTDSP 521
G MV + P
Sbjct: 285 GKMVGNKP 292
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Frame = +3
Query: 258 NGELVHGQAIKIEAAKSRKA--PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
NG L+ Q I + SR S T ++V NL + +++ LF +FG + ++
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVM 151
Query: 432 -------RNYGFVHLDATGDVNDAIKELNGMMVTD 515
R +GFV+ + AI+++NG++V +
Sbjct: 152 KDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDE 186
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 321 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 485
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 486 KELNG 500
+G
Sbjct: 63 HGRDG 67
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 321 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 485
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 486 KELNG 500
+G
Sbjct: 63 HGRDG 67
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 321 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 485
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 486 KELNG 500
+G
Sbjct: 63 HGRDG 67
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 321 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 485
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Query: 486 KELNG 500
+G
Sbjct: 63 YGRDG 67
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
I++GNL E ++ LF KYG VV+ D+
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 321 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 485
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Query: 486 KELNG 500
+G
Sbjct: 63 YGRDG 67
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
I++GNL E ++ LF KYG VV+ D+
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Frame = +3
Query: 255 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 434
+NG+ V + + A ++ T KIFVG + E+++ F K+G VVE ++R
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Query: 435 N--------YGFVHLDATGDVNDAIKELNGMMVTDS 518
+ +GFV D+ V++ + + N + + D+
Sbjct: 143 DHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADT 178
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 235
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEV 162
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
G KIFIG L TT F KYG + + I+R+
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Frame = +3
Query: 255 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 434
+NG+ V + + A ++ T KIFVG + E+++ F K+G VVE ++R
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Query: 435 N--------YGFVHLDATGDVNDAIKELNGMMVTDS 518
+ +GFV D+ V++ + + N + + D+
Sbjct: 143 DHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADT 178
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 235
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEV 162
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
G KIFIG L TT F KYG + + I+R+
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 40.7 bits (91), Expect = 7e-04
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +3
Query: 306 SRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGTVVEC----DIV---RNYGFVHL 455
S + PST + +F+ NL + E F FGT++ C D+V + YGFV
Sbjct: 120 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQF 179
Query: 456 DATGDVNDAIKELNGMMVTD 515
+ AI +LNGM++ D
Sbjct: 180 EKEETAQAAIDKLNGMLLND 199
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = +3
Query: 288 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGF 446
K E + + + +++ NL D +++E+F ++G V C ++ N +GF
Sbjct: 313 KFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGF 372
Query: 447 VHLDATGDVNDAIKELNGMMVTDSP 521
V + A+KE+NG M+ P
Sbjct: 373 VAYSNPEEALLAMKEMNGKMIGRKP 397
Score = 33.9 bits (74), Expect = 0.075
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = +2
Query: 41 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC----DIV---R 199
I + + +P +++ G G +FI NL L F +GT++ C D+V +
Sbjct: 115 IRIMLSNRDPSTRLSGKGN--VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSK 172
Query: 200 NYGFVHMENEQVGR 241
YGFV E E+ +
Sbjct: 173 GYGFVQFEKEETAQ 186
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +3
Query: 282 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------Y 440
A+ AA + + P + ++VG+L + +LF + V + R+ Y
Sbjct: 28 AVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGY 87
Query: 441 GFVHLDATGDVNDAIKELNGMMVTDSP*R 527
+V+ D + A++ LN + D P R
Sbjct: 88 AYVNFANPEDASRAMESLNYAPIRDRPIR 116
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 486 KELNG 500
KE++G
Sbjct: 94 KEMDG 98
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 486 KELNG 500
KE++G
Sbjct: 94 KEMDG 98
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +2
Query: 14 GVHIFNLCYILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
GV LCY + S SK G +F+G LS TTE LR + KYG + +
Sbjct: 37 GVRRALLCYNAGLYDPSGD-SKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRL 95
Query: 194 VRN--------YGFVHMENEQ 232
VR+ YGFV E E+
Sbjct: 96 VRHIVTGASRGYGFVEYETEK 116
Score = 31.5 bits (68), Expect = 0.40
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Frame = +3
Query: 312 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATG 467
KA P +FVG L+ T +RE+ K+G + +VR+ YGFV +
Sbjct: 57 KAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEK 116
Query: 468 DVNDAIKELNGMMV 509
++ A ++ + ++
Sbjct: 117 EMLRAYEDAHHSLI 130
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Frame = +3
Query: 255 LNGELVHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 428
LNG + GQ +K+ A ++ ++ IFVG+L+ + + + F F + + +
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARV 179
Query: 429 V--------RNYGFVHLDATGDVNDAIKELNGMMVTDSP*RCS 533
+ R +GFV D AI E+NG V+ RC+
Sbjct: 180 MWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCN 222
Score = 35.1 bits (77), Expect = 0.032
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 327 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIK 488
PTT ++ GN+ + ++E+F G + C ++R +YGFVH + AI
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIM 118
Query: 489 ELNGMMVTDSP 521
LNG + P
Sbjct: 119 TLNGRHIFGQP 129
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRNYGF 211
+++GNLS + T+ DL LF G + E + R+ GF
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGF 308
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 486 KELNG 500
E++G
Sbjct: 94 SEMDG 98
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 486 KELNG 500
E++G
Sbjct: 94 SEMDG 98
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 485
+ ++FV L+ T +R+LF FG + E ++R+ +GF+ D+ D A+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 486 KELNGMMV 509
K L+G +V
Sbjct: 66 KSLDGKIV 73
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +3
Query: 345 VGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAIKELNG 500
V NL++ TR P++ ELF FG V + + R +GFV+ + D AI +LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 38.7 bits (86), Expect = 0.003
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Frame = +3
Query: 255 LNGELVHGQAIKIEAA---KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVE 419
L+G G+A+K+ A K K P P T K+FVGNL+ + + F++ G VV
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 420 CDIV--------RNYGFVHLDATGDVNDAIKELNG 500
+V R YGFV + ++ A++ L+G
Sbjct: 206 ARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDG 240
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV 214
K+F+GNLS T L F + G VV +V R YGFV
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNG 500
I+VGNL R EV +LF K+G +V+ D+ Y FV + D +DAI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDG 67
Score = 30.3 bits (65), Expect = 0.92
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
I++GNL + ++ LF KYG +V+ D+
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDL 38
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = +3
Query: 294 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 449
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 450 HLDATGDVNDAIKELNGMMVTDSP*R 527
+ +V A ++ NG P R
Sbjct: 146 TMSTAAEVEAAAQQFNGYEFEGRPLR 171
Score = 33.5 bits (73), Expect = 0.099
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 491
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 492 LNG 500
LNG
Sbjct: 310 LNG 312
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 220
K+F+GNLS A L LFE G V +++ R +GFV M
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 147
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q
Sbjct: 246 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQ 301
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = +3
Query: 294 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 449
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 450 HLDATGDVNDAIKELNGMMVTDSP*R 527
+ +V A ++ NG P R
Sbjct: 146 TMSTAAEVEAAAQQFNGYEFEGRPLR 171
Score = 33.5 bits (73), Expect = 0.099
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 491
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 492 LNG 500
LNG
Sbjct: 318 LNG 320
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 220
K+F+GNLS A L LFE G V +++ R +GFV M
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 147
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q
Sbjct: 254 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQ 309
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Frame = +3
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 482
P + F+G L T +R+ F+K+G +VE +V R +GF+ D +++A
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 483 IKELNGM 503
I +NGM
Sbjct: 65 IAAMNGM 71
Score = 34.7 bits (76), Expect = 0.043
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
++ FIG L+ T++ LR FEKYG +VE +V
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVV 39
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 38.3 bits (85), Expect = 0.003
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Frame = +3
Query: 255 LNGELVHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 428
LNG + GQ IK+ A ++ ++ IFVG+L+ + + + F F + + +
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARV 175
Query: 429 V--------RNYGFVHLDATGDVNDAIKELNGMMVTDSP*RCS 533
+ R +GFV D AI E+NG ++ RC+
Sbjct: 176 MWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCN 218
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 318 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAI 485
PST ++VGN+ + P ++E+F G V ++R +YGFVH AI
Sbjct: 55 PST-CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAI 113
Query: 486 KELNGMMVTDSP 521
LNG + P
Sbjct: 114 LSLNGRHLFGQP 125
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 38.3 bits (85), Expect = 0.003
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Frame = +3
Query: 183 NAISSEITVSCTWKTNKSA-ANHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLT 359
N+ S +++ W + S A + + E + + A ++ + K+FVGNL
Sbjct: 40 NSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLP 99
Query: 360 DKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVTD 515
+ ++ +LF+ G V +++ R +GFV + + +V A ++ NG +
Sbjct: 100 FNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDG 159
Query: 516 SP*R 527
P R
Sbjct: 160 RPLR 163
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 491
+++VGNL+ + LF + G VVE ++ + +GFV D++ +V +AIK
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 492 LNG 500
L+G
Sbjct: 265 LDG 267
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 53 FVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYG 208
F P + + K+F+GNL A L LFE G V +++ R +G
Sbjct: 76 FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFG 135
Query: 209 FVHMEN 226
FV M +
Sbjct: 136 FVTMSS 141
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
G+G ++++GNLS + L LF + G VVE ++ + +GFV ++ Q
Sbjct: 201 GSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQ 256
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 318 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAI 485
PST ++VGN+ + P ++E+F G V C ++R +YGFVH AI
Sbjct: 50 PST-CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAI 108
Query: 486 KELNGMMVTDSP 521
LNG + P
Sbjct: 109 LSLNGRHLFGQP 120
Score = 32.7 bits (71), Expect = 0.17
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Frame = +3
Query: 255 LNGELVHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 428
LNG + GQ IK+ A ++ ++ IFVG+L+ + + F + T + +
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARV 170
Query: 429 V--------RNYGFVHLDATGDVNDAIKELNGMMVTDSP*RCS 533
+ R +GFV D AI E+ G + RC+
Sbjct: 171 MWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCN 213
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 37.9 bits (84), Expect = 0.005
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +2
Query: 89 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+ T K+F+G++ TE ++RP FE++G V+E ++++
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 33.5 bits (73), Expect = 0.099
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 31.9 bits (69), Expect = 0.30
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +3
Query: 309 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATG 467
R+ T K+FVG+L + EV E+F +FG V + ++R+ GFV +
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262
Query: 468 DVNDAIKELNG 500
AI LNG
Sbjct: 263 TAMAAIDGLNG 273
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
T K+FVG++ E+R F++ G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 37.9 bits (84), Expect = 0.005
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +2
Query: 89 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+ T K+F+G++ TE ++RP FE++G V+E ++++
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 33.5 bits (73), Expect = 0.099
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 31.9 bits (69), Expect = 0.30
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +3
Query: 309 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATG 467
R+ T K+FVG+L + EV E+F +FG V + ++R+ GFV +
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262
Query: 468 DVNDAIKELNG 500
AI LNG
Sbjct: 263 TAMAAIDGLNG 273
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
T K+FVG++ E+R F++ G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNG 500
++++VGNL + E+ + F+ FG + + R Y F+ + + D DAI+E++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +3
Query: 300 AKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDV 473
A +R T T IFVG L ++++ F +FG +V I + GFV +
Sbjct: 295 AFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNA 354
Query: 474 NDAIKELNGMMVTDSP*RCSCRR 542
+A+++LNG ++ R S R
Sbjct: 355 EEALEKLNGTVIGKQTVRLSWGR 377
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGRE 244
IF+G L T+ DL+ F ++G +V I + GFV N E
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEE 356
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNG 500
I+VGNL R E+ ++F K+G +V+ ++ Y FV + + D DAIK +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDG 67
Score = 30.7 bits (66), Expect = 0.70
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 80 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 193
M G + I++GNL E ++ +F KYG +V+ ++
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIEL 38
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
G T KIF+G L TEA+ + F+++GT+ + ++ R +GF+ ++E+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174
Score = 35.1 bits (77), Expect = 0.032
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV---- 473
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ V
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Query: 474 NDAIKELNGMMV 509
+ ELNG MV
Sbjct: 181 HKTFHELNGKMV 192
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+FIG +S T E L+ F KYG +VE I+R+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+F+G ++ T ++E F K+G +VE I+R+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 36.7 bits (81), Expect = 0.011
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Frame = +3
Query: 312 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATGD- 470
++P T K+F+ L+ T +R F+ FG +VE I+ R+ G+ L+ T +
Sbjct: 275 ESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEE 334
Query: 471 -VNDAIKELNGMMV 509
A+KE+NG ++
Sbjct: 335 AAGTALKEMNGKII 348
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 36.7 bits (81), Expect = 0.011
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 273 HGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGF 446
HG + ST T IFVG + ++R+ F +FG VV I + GF
Sbjct: 302 HGSNGSMGYGSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGF 360
Query: 447 VHLDATGDVNDAIKELNGMMVTDSP*RCSCRR 542
V DAI+ LNG ++ + R S R
Sbjct: 361 VQFADRKSAEDAIESLNGTVIGKNTVRLSWGR 392
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQ 232
IF+G + + DLR F ++G VV I + GFV + +
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRK 367
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 479
T TK+FVG L +T E+R F++FG ++E I+ + YGFV +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 480 AIKELN 497
A+ + N
Sbjct: 74 AVADPN 79
Score = 30.3 bits (65), Expect = 0.92
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
K+F+G L+ +T ++R FE++G ++E I+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 479
T TK+FVG L +T E+R F++FG ++E I+ + YGFV +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 480 AIKELN 497
A+ + N
Sbjct: 74 AVADPN 79
Score = 30.3 bits (65), Expect = 0.92
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
K+F+G L+ +T ++R FE++G ++E I+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 36.7 bits (81), Expect = 0.011
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Frame = +3
Query: 234 SAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 413
SA ++ G L+ ++ + S P TK++V L+ +T +R+ F++FG +
Sbjct: 44 SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103
Query: 414 VECDIV------RNYGFVHLDATGDVNDAIKELNGM 503
+ ++V R GF L + +A+K + GM
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETE-EEAMKAIQGM 138
Score = 34.7 bits (76), Expect = 0.043
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 62 SNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
S+P S G T K+++ LS +TTE LR FE++G ++ ++V
Sbjct: 66 SSPPSSSSGPKT-KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV 109
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 36.7 bits (81), Expect = 0.011
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Frame = +3
Query: 303 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 458
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 459 ATGDVNDAIKELNG 500
+DAIK ++G
Sbjct: 62 DRRGADDAIKHMHG 75
Score = 35.9 bits (79), Expect = 0.019
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
+IF+G LS TE L F++YG + EC I+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 36.7 bits (81), Expect = 0.011
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Frame = +3
Query: 303 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 458
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 459 ATGDVNDAIKELNG 500
+DAIK ++G
Sbjct: 62 DRRGADDAIKHMHG 75
Score = 35.9 bits (79), Expect = 0.019
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
+IF+G LS TE L F++YG + EC I+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.3 bits (80), Expect = 0.014
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 199
K+F+G L +EA+++ LF KYGT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 434
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
+ K+FVG + ++ LFQ+F V E +I+++
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.3 bits (80), Expect = 0.014
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 199
K+F+G L +EA+++ LF KYGT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 434
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
+ K+FVG + ++ LFQ+F V E +I+++
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 36.3 bits (80), Expect = 0.014
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +2
Query: 83 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE 160
Score = 32.7 bits (71), Expect = 0.17
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
T KIFVG L + + F++FGT + ++ R +GF+ D+ V +
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Query: 486 ----KELNGMMV 509
ELNG MV
Sbjct: 167 LKTFHELNGKMV 178
Score = 30.7 bits (66), Expect = 0.70
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+FIG +S T E L+ F +G V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 36.3 bits (80), Expect = 0.014
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +2
Query: 83 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE 160
Score = 32.7 bits (71), Expect = 0.17
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
T KIFVG L + + F++FGT + ++ R +GF+ D+ V +
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Query: 486 ----KELNGMMV 509
ELNG MV
Sbjct: 167 LKTFHELNGKMV 178
Score = 30.7 bits (66), Expect = 0.70
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+FIG +S T E L+ F +G V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 36.3 bits (80), Expect = 0.014
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 479
TP+ KIFVG L+ T ++E F FG +V+ +V R +GFV D+ N+
Sbjct: 34 TPS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANN 92
Query: 480 AI-----KELNGMMVTDSP 521
A+ KEL+G ++ P
Sbjct: 93 AMQAMQNKELDGRIIGVHP 111
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
T+ + + N++ +TT DL PLF KYG VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 485
T + V N+T +T A ++ LF K+G VV+ I R+ + FV + + A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 486 KELNGMMV 509
+ L+G +V
Sbjct: 75 ERLDGRVV 82
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
T+ + + N++ +TT DL PLF KYG VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 485
T + V N+T +T A ++ LF K+G VV+ I R+ + FV + + A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 486 KELNGMMV 509
+ L+G +V
Sbjct: 75 ERLDGRVV 82
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 35.9 bits (79), Expect = 0.019
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Frame = +3
Query: 201 ITVSCTWKTNKSAA--NHSELNGELVHGQAIKIEAAKSRKAPST--PTTKIFVGNLTDKT 368
+T+S + K+ N E+NG + ++ + P +I+VGNL
Sbjct: 159 VTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDV 218
Query: 369 RAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNG 500
+ + LF + G VV+ +V R +GFV + +VN AI L+G
Sbjct: 219 DSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG 270
Score = 34.3 bits (75), Expect = 0.057
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 229
F+I++GNL L LF ++G VV+ +V R +GFV M NE
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 258
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Frame = +3
Query: 318 PSTPT-TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGD 470
P P K+FVGNL + + LF++ GTV +++ R +GFV + +
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 471 VNDAIKELNGMMV 509
A+++ N V
Sbjct: 167 AEKAVEKFNSFEV 179
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+F+GNL L LFE+ GTV +++ N
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYN 147
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
+TK+++G L+ T +++ F F V E ++ R YGFV+ + N AI
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 486 KELNG 500
+NG
Sbjct: 90 SAMNG 94
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Frame = +3
Query: 303 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 452
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 46 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 105
Query: 453 LDATGDVNDAIKELNG 500
++ D A++ +NG
Sbjct: 106 FNSKEDAQSAVEAMNG 121
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Frame = +3
Query: 303 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 452
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 65 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 124
Query: 453 LDATGDVNDAIKELNG 500
++ D A++ +NG
Sbjct: 125 FNSKEDAQSAVEAMNG 140
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.9 bits (79), Expect = 0.019
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREPFR 253
+IF+G LS + T+ DL F ++G +++C I+ R +GF+ + + E R
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Score = 34.7 bits (76), Expect = 0.043
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 488
++IFVG L+ + ++ F +FG +++C I+ R +GF+ ++++I+
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 489 ELNG 500
E++G
Sbjct: 67 EMHG 70
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = +3
Query: 285 IKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YG 443
++ E A ++ ++V NL +++E+F FGTV ++R+ G
Sbjct: 116 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSG 175
Query: 444 FVHLDATGDVNDAIKELNGMMVTDSP 521
FV + +A+ +L+G M+ P
Sbjct: 176 FVAFATPEEATEAMSQLSGKMIESKP 201
Score = 35.5 bits (78), Expect = 0.024
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Frame = +3
Query: 255 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 434
LN + V+ + A T T ++V NL + T +++ F ++G + +++
Sbjct: 3 LNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMK 62
Query: 435 N-------YGFVHLDATGDVNDAIKELNGMMVTD 515
+ +GFV+ + D A++ LNG D
Sbjct: 63 DGEGKSKGFGFVNFENADDAARAVESLNGHKFDD 96
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMEN 226
+++ NL++ TT+ DL+ F +YG + ++++ +GFV+ EN
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFEN 78
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.9 bits (79), Expect = 0.019
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNG 500
++++VGNL + E+ + F+ FG V + R Y F+ + D DAI+ L+G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.9 bits (79), Expect = 0.019
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Frame = +3
Query: 234 SAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 413
S E+ E G+ ++E K S +++VGNL + E+ ++F + GTV
Sbjct: 84 SVEEEEEVEEEGDEGEE-EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTV 142
Query: 414 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMV 509
V+ IV R +GFV + + + +A++ N +
Sbjct: 143 VDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI 182
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGRE 244
++++GNL T ++L +F + GTVV+ IV R +GFV M + + +E
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
KIF+G +S T E LR F KYG VV+ I+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKII 66
Score = 33.5 bits (73), Expect = 0.099
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
++KIFVG ++ T +RE F K+G VV+ I+ R + FV +T + ++A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 486 KELNG 500
+L+G
Sbjct: 93 -QLDG 96
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQ 232
+F+ L+ T + DL +F ++GTVV D++R+ Y F+ EN++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKE 295
Score = 33.9 bits (74), Expect = 0.075
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 440
P +FV L T ++ +F +FGTVV D++R++
Sbjct: 241 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDF 278
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 35.5 bits (78), Expect = 0.024
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY-------GFVHLDATGDVNDAIKELN 497
+FV NL +T+ P + + F+K G VV ++ N GFV + + +A+++ N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 498 G 500
G
Sbjct: 189 G 189
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.5 bits (78), Expect = 0.024
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMM 506
T IFVG L ++++ F +FG +V I + GFV + +A+++LNG +
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTV 363
Query: 507 VTDSP*RCSCRR 542
+ R S R
Sbjct: 364 IGKQTVRLSWGR 375
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGRE 244
IF+G L T+ DL+ F ++G +V I + GFV N E
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEE 354
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 35.5 bits (78), Expect = 0.024
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 479
T TK+FVG L +T E+R F +FG ++E I+ + YGFV +
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATR 73
Query: 480 AIKELN 497
A+ + N
Sbjct: 74 AVADPN 79
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 35.1 bits (77), Expect = 0.032
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 488
+K+F+G L+ T + E F K G VVE IV + +GFV + + A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 489 ELNGMMV 509
E NG +
Sbjct: 94 EFNGQQL 100
Score = 33.9 bits (74), Expect = 0.075
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
K+FIG LS TTE L F K G VVE IV
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIV 66
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 491
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 492 LNG 500
+NG
Sbjct: 67 MNG 69
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 491
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 492 LNG 500
+NG
Sbjct: 67 MNG 69
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 491
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 492 LNG 500
+NG
Sbjct: 67 MNG 69
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 491
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 492 LNG 500
+NG
Sbjct: 67 MNG 69
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 35.1 bits (77), Expect = 0.032
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
++++GNLS TT+ LR F YG VV+ ++R+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRD 37
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.1 bits (77), Expect = 0.032
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = +3
Query: 321 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 476
++P++K+F+G L+ +++ F FG V E I R +GFV GD
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 477 DAIKELNGMMVTDSP*RCS 533
A ++G + P R S
Sbjct: 97 SAKDAMDGKGLLGRPLRIS 115
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 35.1 bits (77), Expect = 0.032
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TKIFVG L +T+ +R F++FG +VE ++
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVI 54
Score = 30.7 bits (66), Expect = 0.70
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
KIF+G L+ +T +R FE++G +VE ++
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVI 54
>At2g34680.1 68415.m04260 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; identical to cDNA hypothetical protein
(AIR9) mRNA, partial cds GI:3695020
Length = 1661
Score = 35.1 bits (77), Expect = 0.032
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +3
Query: 78 KCRAPVLSKSSSGT---FLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKSAANH 248
+C + +S + T +K Q + DR N V NA ITV C
Sbjct: 509 QCHFGLFQESPTATDQELALKFQWSVADRSLSNFVPILNATKENITVKCCAGKGIPKVVS 568
Query: 249 SELNGELVHGQAIKIEA 299
ELNGELV G IK +A
Sbjct: 569 LELNGELVEGNIIKGQA 585
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.1 bits (77), Expect = 0.032
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 229
+K+F+G ++ +T+E L+ F +YG V+E + R +GFV N+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
Score = 35.1 bits (77), Expect = 0.032
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 229
T KIF+G LS TTE + + FE++G + ++ R +GFV ++E
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSE 171
Score = 33.5 bits (73), Expect = 0.099
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Frame = +3
Query: 306 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 461
S ++ T KIFVG L+ T E + F++FG + ++ R +GFV D+
Sbjct: 111 SSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
Query: 462 TGDVNDAIKELNGMMVTDSP*RCSCRRVVSGSG 560
V + + + N ++D R +R + G
Sbjct: 171 EDSV-EVVMQSNFHELSDK--RVEVKRAIPKEG 200
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 35.1 bits (77), Expect = 0.032
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 327 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIK 488
PTT ++ GN+ + ++E+F G + C ++R +YGFVH + AI
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIM 118
Query: 489 ELNGMMVTDSP 521
LNG + P
Sbjct: 119 TLNGRHIFGQP 129
Score = 32.3 bits (70), Expect = 0.23
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Frame = +3
Query: 255 LNGELVHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV---- 416
LNG + GQ +K+ A ++ ++ IFVG+L+ + + + F F +
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYR 179
Query: 417 ECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVTDSP*RCS 533
+ ++ R +GFV D AI E+NG V+ RC+
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCN 226
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRNYGF 211
+++GNLS + T+ DL LF G + E + R+ GF
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGF 312
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.043
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 33.9 bits (74), Expect = 0.075
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+ +
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 486 ----KELNGMMV 509
ELNG +V
Sbjct: 169 HKTFHELNGKLV 180
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 205
G T KIF+G L TE + + F+++GT+ + ++ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDH 145
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.043
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 33.9 bits (74), Expect = 0.075
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+ +
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 486 ----KELNGMMV 509
ELNG +V
Sbjct: 169 HKTFHELNGKLV 180
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 205
G T KIF+G L TE + + F+++GT+ + ++ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDH 145
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 34.7 bits (76), Expect = 0.043
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 33.9 bits (74), Expect = 0.075
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+ +
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 486 ----KELNGMMV 509
ELNG +V
Sbjct: 169 HKTFHELNGKLV 180
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 205
G T KIF+G L TE + + F+++GT+ + ++ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDH 145
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 34.7 bits (76), Expect = 0.043
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Frame = +2
Query: 86 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 238
G TF K+F+G L+ +T LR FE+YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 239 R 241
R
Sbjct: 79 R 79
Score = 32.7 bits (71), Expect = 0.17
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TK+FVG L +T++ +R+ F+++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 34.3 bits (75), Expect = 0.057
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREPFR 253
IF+ TT+ +L+ FE YG + EC +V + YGFV + + RE +
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 34.3 bits (75), Expect = 0.057
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDAT-GDVNDAIKEL 494
K++VGNL T+ +R F KFGT+V ++ RN F L T G+ DA
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSF 272
Query: 495 NG 500
NG
Sbjct: 273 NG 274
Score = 28.3 bits (60), Expect = 3.7
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Frame = +3
Query: 252 ELNGELVHGQAIKIE---AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 422
E E+V G+A + +K+ +++V N+ ++ ++FQ FGTV+
Sbjct: 78 EKEEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISV 137
Query: 423 DIVRN--------YGFVHLDATGDVNDAIKELNGMMV 509
++ RN G+V + + AI L+G V
Sbjct: 138 EVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEV 174
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+++GNL T LR F K+GT+V ++ +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHD 246
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.075
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVE 184
K+++ +S TE D+R +FEKYG V E
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTE 138
Score = 31.5 bits (68), Expect = 0.40
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = +3
Query: 318 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC-------DIVRNYGFVHLDATGDVN 476
P P K++V L +T EV E+F ++G + + I R Y FV
Sbjct: 204 PDNP--KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMAL 261
Query: 477 DAIKELNGM 503
AIK LNG+
Sbjct: 262 AAIKALNGL 270
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.9 bits (74), Expect = 0.075
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGF 211
+++G+L+ +TTE+DL LF +YG + + + GF
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGF 55
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHL 455
+ ++VG+LT +T ++ ELF ++G + + + GF +
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFI 58
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 33.9 bits (74), Expect = 0.075
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 80 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
M T K+F+G L+ +T + LR FE++G +VE ++
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.075
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 80 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
M T K+F+G L+ +T + LR FE++G +VE ++
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.9 bits (74), Expect = 0.075
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELN 497
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.9 bits (74), Expect = 0.075
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELN 497
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.5 bits (73), Expect = 0.099
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 485
++K+F+G + +RE F K+G VV+ ++ R +GFV ++ + AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 486 KELNG 500
+ L+G
Sbjct: 99 QALDG 103
Score = 30.7 bits (66), Expect = 0.70
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
K+FIG ++ E LR F KYG VV+ ++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVI 72
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.099
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDA 461
KIFVGNL + PE E F++FG + +++ + V +A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 33.5 bits (73), Expect = 0.099
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 104 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
+F+ N +D T DL FE YG +V I RN+ F+ E ++
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQE 101
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 258 NGELVHGQAIKIEAAKSRKAPST---PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 428
+ ++ G+ ++I+ R + S+ T KIFVG + E +E F +FG + E I
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQI 161
Query: 429 VRNY 440
+R++
Sbjct: 162 MRDH 165
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
KIF+G L+ +TT A+ F KYG + + I+++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD 76
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
KIFVG L +T + E + F K+G + + I+++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD 76
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 229
T KIF+G L T+ + R FE YG V + I+ R +GFV ++E
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSE 161
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
K+F+G +S +T E LR F YG V + ++R+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD 40
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = +3
Query: 294 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHL 455
+++ A + ++V N+ + T +++ELFQ+ G V + R++GFVH
Sbjct: 279 KSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHY 338
Query: 456 DATGDVNDAIKELNGMMVTDSP 521
A+K+ V P
Sbjct: 339 AERSSALKAVKDTERYEVNGQP 360
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 80 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
+P G+ ++FIG L E DLR L E+ G + E ++++
Sbjct: 111 LPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKD 150
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.13
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 208
+++G + TE DL +F +YG +V+ +++R+ G
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKG 72
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 33.1 bits (72), Expect = 0.13
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Frame = +3
Query: 225 TNKSAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKF 404
T K AA + + NG A S + + IFVG L ++ + F F
Sbjct: 291 TPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDF 350
Query: 405 GTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVTDSP*RCSCRR 542
G VV I + GFV +AI LNG ++ + R S R
Sbjct: 351 GEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGR 398
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Frame = +2
Query: 86 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 238
G TF K+F+G L+ +T LR F++YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 239 R 241
R
Sbjct: 79 R 79
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TK+FVG L +T++ +R F ++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.1 bits (72), Expect = 0.13
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 199
K+F+G L +E +++ LF +YGT+ + I+R
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 434
P K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 494
+F+ N+ + E+ FQ FG V+ + + +GF+ D+ +AI +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 495 NGMMVTDSP*RCSCRR 542
NG ++ + +R
Sbjct: 401 NGCQLSGKKLKVQLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.1 bits (72), Expect = 0.13
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 199
K+F+G L +E +++ LF +YGT+ + I+R
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 434
K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 494
+F+ N+ + E+ FQ FG V+ + + +GF+ D+ +AI +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 495 NGMMVTDSP*RCSCRR 542
NG ++ + +R
Sbjct: 392 NGCQLSGKKLKVQLKR 407
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Frame = +2
Query: 83 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 27 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK- 488
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 489 ---ELNGMMV 509
ELNG MV
Sbjct: 94 TFHELNGKMV 103
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Frame = +2
Query: 83 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK- 488
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 489 ---ELNGMMV 509
ELNG MV
Sbjct: 167 TFHELNGKMV 176
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Frame = +2
Query: 83 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ 232
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK- 488
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 489 ---ELNGMMV 509
ELNG MV
Sbjct: 167 TFHELNGKMV 176
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 32.7 bits (71), Expect = 0.17
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Frame = +3
Query: 276 GQAIKIEAAKSRK--------APS-TPTTKIFVGNLTDKTRAPEVRELFQ-KFGTVVECD 425
G+ +K++ AK++K PS PT +FV NL + RA ++E F G VV +
Sbjct: 161 GRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTE 220
Query: 426 IV--------RNYGFVHLDATGDVNDAIKELNG 500
++ YGFV A+ E G
Sbjct: 221 VIFHENPRRSSGYGFVSFKTKKQAEAALIEFQG 253
Score = 30.7 bits (66), Expect = 0.70
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHME 223
++ N+ +T D+R LFEKYG+V++ ++ RN G V +E
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIE 140
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +3
Query: 318 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVN 476
P+ + ++V NL++ +RE+F +G +V ++ + +GFV +
Sbjct: 299 PNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESK 358
Query: 477 DAIKELNGMMVTDSP 521
A + LNG +V P
Sbjct: 359 QAKRYLNGFLVDGKP 373
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREPFR 253
+++ NLS+ E LR +F YG +V ++ + +GFV N + ++ R
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKR 362
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
F+IF+G+L +E DL+ +F G V E I++N
Sbjct: 214 FEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKN 248
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 32.3 bits (70), Expect = 0.23
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +3
Query: 294 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFV 449
E SR S+ + + + NL R ++R+ F++FG + + + RNY GFV
Sbjct: 34 ERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFV 93
Query: 450 HLDATGDVNDAIKELNGMMV 509
D +A+K +N ++
Sbjct: 94 KYRYAEDAAEAMKRMNHKVI 113
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 32.3 bits (70), Expect = 0.23
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 500
P+ ++VGNL E+ + F +FG + R+Y FV+ + D AI+ L G
Sbjct: 21 PSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQG 80
Query: 501 MMVTDSP*R 527
++ +P R
Sbjct: 81 FPLSGNPLR 89
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 32.3 bits (70), Expect = 0.23
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Frame = +3
Query: 315 APSTPTTKIFVGNLTDKTRAPEVRELFQKFG-TVVECDIV--------RNYGFVHLDATG 467
AP K++V NL K R+ +RELF V +V YGFV
Sbjct: 188 APGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATRE 247
Query: 468 DVNDAIKELNGMMVTDSP 521
+ +AI +LNG + P
Sbjct: 248 EAENAITKLNGKEIMGRP 265
>At1g72880.2 68414.m08430 acid phosphatase survival protein SurE,
putative similar to Swiss-Prot:P36664 acid phosphatase
surE (EC 3.1.3.2) (Stationary-phase survival protein
surE) [Escherichia coli O157:H7]; contains Pfam domain
PF01975: Survival protein SurE
Length = 385
Score = 32.3 bits (70), Expect = 0.23
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 213 CTWKTNKSAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVG 350
C +T+KSA+ HS GE + ++K++ A + + TP I +G
Sbjct: 94 CAPQTDKSASAHSTTPGETIAVSSVKLKGATAFEVSGTPVDCISLG 139
>At1g72880.1 68414.m08429 acid phosphatase survival protein SurE,
putative similar to Swiss-Prot:P36664 acid phosphatase
surE (EC 3.1.3.2) (Stationary-phase survival protein
surE) [Escherichia coli O157:H7]; contains Pfam domain
PF01975: Survival protein SurE
Length = 385
Score = 32.3 bits (70), Expect = 0.23
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 213 CTWKTNKSAANHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVG 350
C +T+KSA+ HS GE + ++K++ A + + TP I +G
Sbjct: 94 CAPQTDKSASAHSTTPGETIAVSSVKLKGATAFEVSGTPVDCISLG 139
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.9 bits (69), Expect = 0.30
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +3
Query: 294 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 449
E+ + + P+T +FV L+ +T + +R F +FG V + +V + +GFV
Sbjct: 43 ESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
Query: 450 HLDATGDVNDAIKELNG 500
D I ++G
Sbjct: 103 RYATLEDSAKGIAGMDG 119
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.9 bits (69), Expect = 0.30
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 77 KMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 205
+ P +IF+ + +E+D R FE+YG + + + ++Y
Sbjct: 84 RQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
KIFVG L + ++R+ F +FG + + I ++
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
IF+ L TT +L+ FE YG + EC +V
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVV 195
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
G ++++GNL +E DLR +FE +G+V + R+
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD 319
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVV-------ECDIVRNYGFVHLDATGDVNDAIKEL 494
+++VGNL ++R++F+ FG+V E + + +GFV D +A+ L
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NL 344
Query: 495 NGMM 506
NG +
Sbjct: 345 NGQL 348
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 98 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENE 229
F ++GNL T E DL+ F ++G V+ ++ ++ F ++ E
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLIDYE 51
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 342 FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 458
+VGNL T +++ F +FG V+ ++ ++ F +D
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLID 49
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 31.9 bits (69), Expect = 0.30
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 309 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 419
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 31.9 bits (69), Expect = 0.30
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 309 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 419
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 31.5 bits (68), Expect = 0.40
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 110 IGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHME 223
+ NLS T LR LF GTVV+C I + ++E
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIE 392
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 345 VGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 458
V NL+ ++R+LF GTVV+C I + +++
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIE 392
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 327 PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGM 503
PT +FV N +TR ++ F+ +G V+ + RN+ FV D A+ +
Sbjct: 67 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNS 126
Query: 504 MVTD 515
+ D
Sbjct: 127 KLLD 130
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 95 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQ 232
T +F+ N +T E D+ FE YG V+ + RN+ FV ++
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQE 114
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.5 bits (68), Expect = 0.40
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 229
T KIF+G L T + R FE YG V + I+ R +GFV ++E
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSE 161
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 434
K+F+G ++ T +RE F FG V++ ++R
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMR 39
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 479
T TKI+VG L TR + F++FG ++ ++V + YGFV
Sbjct: 10 TTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATR 69
Query: 480 AIKELN 497
A K+ N
Sbjct: 70 ACKDPN 75
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 31.1 bits (67), Expect = 0.53
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Frame = +3
Query: 279 QAIKIEAAKSRKAPSTPT-TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFV 449
Q + + S PT T IFVG + +++ +F +FG +V I + GFV
Sbjct: 259 QPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFV 318
Query: 450 HLDATGDVNDAIKELNGMMVTDSP*RCSCRR 542
A+ LNG + R S R
Sbjct: 319 QYANRACAEQALSVLNGTQLGGQSIRLSWGR 349
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMEN 226
IF+G + TE DL+ +F ++G +V I + GFV N
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYAN 322
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.1 bits (67), Expect = 0.53
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Frame = +3
Query: 243 NHSELNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 422
+ +E+ G L+ + + E +K++K K+ + NL + + +++ +F G V +
Sbjct: 307 HQTEVKGNLIWARQLGGEGSKAQK------WKLIIRNLPFQAKPSDIKVVFSAVGFVWDV 360
Query: 423 DIVRNY--------GFVHLDATGDVNDAIKELNGMMVTDSP 521
I +N+ FV D +AIK+ NG M P
Sbjct: 361 FIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRP 401
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.1 bits (67), Expect = 0.53
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Frame = +3
Query: 255 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 431
LN +HG+ I++ A K +F+GNL + + F FG + +
Sbjct: 86 LNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIM 145
Query: 432 --------RNYGFVHLDATGDVNDAIKELNGMMVTD 515
R +GF+ D+ + AI+ + G +++
Sbjct: 146 RDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSN 181
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDATGDVNDAIKEL 494
++VG L + + ELF + G VV ++ +NYGF+ + D + AIK L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 495 NGMMVTDSP*R 527
N + + P R
Sbjct: 87 NMIKLHGKPIR 97
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 241
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 241
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 241
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREPFR 253
+F+G L T+ L+ +F +YG +V I + GFV + E R
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALR 314
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 30.7 bits (66), Expect = 0.70
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMM 506
T IFVG L E++ +F +FG ++ I + GFV A+ LNG
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQ 319
Query: 507 VTDSP*RCSCRR 542
+ R S R
Sbjct: 320 LGGQSIRLSWGR 331
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.7 bits (66), Expect = 0.70
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRN------YGFVHLDATGDVNDAI 485
+T +++GN++ T ++ ELF + G + + + +N + FV + D DA+
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 486 KELNGMMVTDSP*R 527
K ++G ++ D P R
Sbjct: 93 KYISGTILDDRPIR 106
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 30.7 bits (66), Expect = 0.70
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 491
++F G+L ++ + + F +F T ++R+ YGFV D+ A+KE
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 492 LNGMMVTDSP 521
+NG V + P
Sbjct: 198 MNGKYVGNRP 207
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREPFR 253
KIF+ L +TT L +FE YG + EC +V + +GFV + + +E +
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREPFR 253
KIF+ L +TT L +FE YG + EC +V + +GFV + + +E +
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 30.3 bits (65), Expect = 0.92
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +3
Query: 339 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 497
++VG L VR +F +G+V+ IV + YGFV +DAI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 498 GMMV 509
G +
Sbjct: 69 GKSI 72
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQ 232
+++G L TE +R +F YG+V+ IV + YGFV N +
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRR 58
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.3 bits (65), Expect = 0.92
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +3
Query: 285 IKIEAAKSRKAP-STP-----TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
+ +E +RKAP +TP T +++G + E+ F +FGTV + RN
Sbjct: 38 LPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARN 94
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIK 488
T + V NL R ++R+ F++FG V + + R+Y GFV D DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 489 ELNGMMV 509
++G ++
Sbjct: 96 HMDGYLL 102
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Frame = +3
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 482
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 102
Query: 483 IKELN 497
I+ L+
Sbjct: 103 IRSLD 107
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Frame = +3
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 482
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 132
Query: 483 IKELN 497
I+ L+
Sbjct: 133 IRSLD 137
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 255 LNGELVHGQAIKIEAAKSRKAPST 326
LNG++V+G+ I +E AK +AP+T
Sbjct: 127 LNGKIVNGRLIFVETAKEVEAPTT 150
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 354 LTDKTRAPEVRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNGMMV 509
L+ T +R+LF F ++ + + +GF+ ++ D A+K LNG +V
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 29.5 bits (63), Expect = 1.6
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Frame = +3
Query: 309 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTVVECDIV--------RNYGFVHLDA 461
+K + P IFVG+L ++E F+ + +V +V + YGFV
Sbjct: 108 QKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167
Query: 462 TGDVNDAIKELNGMMVTDSP*RCS 533
+ N A+ E+NG+ + P R S
Sbjct: 168 ESERNRAMAEMNGLYCSTRPMRIS 191
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +3
Query: 321 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 476
S ++++GN+ ++ +L ++ G V + ++ R +GF + + D N
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 477 DAIKELNGMMV 509
+++LNG V
Sbjct: 132 AVVEKLNGNTV 142
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 241
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 242 E 244
+
Sbjct: 64 D 64
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 491
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 492 LNG 500
+NG
Sbjct: 69 MNG 71
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 241
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 242 E 244
+
Sbjct: 64 D 64
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 491
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 492 LNG 500
+NG
Sbjct: 69 MNG 71
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTV 178
G K+++GNL +E LR +FE +G V
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPV 291
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
+IFVG L +VREL + FG + D+V++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
+IFVG L +VREL + FG + D+V++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 202
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 336 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 437
+IFVG L +VREL + FG + D+V++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 92 GTFKIFIGNLSDKTTEADLRPLF 160
G +++IGNL+ TTE D+R LF
Sbjct: 260 GYNRVYIGNLAWDTTERDIRKLF 282
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 222 KTNKSAANHSELN-GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ 398
K NK+ E N E V + I++ + P K++VG + ++ E+R F+
Sbjct: 124 KVNKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPN-KLYVGGIPYQSTEDEIRSYFR 182
Query: 399 KFGTVVECD 425
G +++ D
Sbjct: 183 SCGVIIKVD 191
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 101 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 236
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 26 FNLCYILLFFVHSNP*SKMPGTG-TFKIF 109
F LCYI+LF +H++ +KM G F +F
Sbjct: 88 FQLCYIILFIMHTDKKNKMKMLGLLFVVF 116
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +2
Query: 95 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 229
T KIF+G L E +L+ F YG ++E I+ R +GFV + E
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Score = 27.9 bits (59), Expect = 4.9
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Frame = +2
Query: 59 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV 214
H + S M G K+F+G +S +TT F K+G VV+ I+ R +GFV
Sbjct: 55 HRHSSSSMSSPG--KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFV 112
Query: 215 HMENEQVGRE 244
+ V +
Sbjct: 113 TFADSAVAEK 122
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 291 IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
++ S + S+P K+FVG ++ +T A F KFG VV+ I+
Sbjct: 53 VDHRHSSSSMSSPG-KLFVGGVSWETTAETFANYFGKFGEVVDSVIM 98
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Frame = +3
Query: 330 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----------RNYGFVHLDATGDVN 476
TT ++VGNL+ K + F +FG + I+ RN GFV D
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 477 DAIKELNGMMV 509
A E+ G++V
Sbjct: 238 AAKDEMQGIIV 248
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Frame = +3
Query: 246 HSELNGELVHGQAIKIEAAKSRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQK 401
+ +L G ++ G A+ + +++++ P TK+ V N+ + E+R+LF
Sbjct: 632 YRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSP 691
Query: 402 FGTV 413
FG +
Sbjct: 692 FGQI 695
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 324 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
T TK+FVG L T + + F K+G ++E I+
Sbjct: 14 TKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVII 49
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 327 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFV 449
P+ + VGN++ E++ LF++FG + +N GF+
Sbjct: 215 PSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFI 256
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFV 214
+ +GN+S + +L+ LFE++G + +N GF+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFI 256
>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9Y4I5 Tesmin
(Metallothionein-like 5, testis-specific) {Homo
sapiens}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 408
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 87 APVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKSAAN-HSELNG 263
+PV S S T + PQKP L ++ N V+ E S ++ + N H++L
Sbjct: 36 SPVKSSQQSETEVTPPQKPPLHQFGHNQVQKNRVRYCECFASGSYCNGCNCVNCHNKLEN 95
Query: 264 E 266
E
Sbjct: 96 E 96
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +3
Query: 333 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIK 488
T + V NL R ++R F++FG V + + R+Y GF+ D +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 489 ELNGMMV 509
+++G ++
Sbjct: 97 QMDGYLL 103
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENE 229
+F+G L T+ L+ +F +YG +V I + GFV +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 86 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 184
G G F +F+G+L TT+A+L KYG V E
Sbjct: 231 GGGAF-LFVGDLHWWTTDAELEAELCKYGAVKE 262
>At4g01070.1 68417.m00145 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 480
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 559 PLPDTTRRQLHLHGLSVTII 500
PL + +R +HLHGL+VT +
Sbjct: 22 PLVEFAKRLVHLHGLTVTFV 41
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +3
Query: 309 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDAT 464
R+ + + ++FV L+ T ++++ F FG +V+ ++ + +GFV
Sbjct: 26 RRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATI 85
Query: 465 GDVNDAIKELN 497
D A E+N
Sbjct: 86 EDAEKAKAEMN 96
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 104 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 196
+F+ +S +TE L F +YG V++ D++
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVI 53
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 421 HSTTVPNF*NSSRTSGARVLSVKLPTNILVVGVDG 317
H T+ N +++TSG S+K P+ G++G
Sbjct: 1270 HKVTILNLPETAQTSGLHEASIKAPSVTFGTGIEG 1304
>At5g53890.1 68418.m06703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1036
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 452 MHEAVVTHDIALDDRPELLKQLADFGRARLVR 357
+H V + +I LD++ E LADFG ARL+R
Sbjct: 877 IHRDVKSSNILLDEKFEA--HLADFGLARLLR 906
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 318 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 431
P+ TKI+V L TR + F++FG +V +V
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVV 41
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Frame = +3
Query: 183 NAISSEITVSCTWKTNKSAANHSELNGELVHGQAIKIEAA----KSRKAPST-----PTT 335
N +S + ++T +SAA N L+ G ++++ A K +K P
Sbjct: 224 NEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDPKR 283
Query: 336 KIFVGNLTDKTRAPEVRELF 395
+F+GNL + EV +LF
Sbjct: 284 TVFMGNLPFDVKDEEVYQLF 303
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,442,547
Number of Sequences: 28952
Number of extensions: 224560
Number of successful extensions: 1179
Number of sequences better than 10.0: 174
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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