Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021884
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    35   0.013
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    33   0.029
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    28   1.5  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    27   2.5  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    27   3.4  

>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 421 LVGKTALITGCNTGIGKETALDFYKRGAR 507
           L GK AL+TG + GIG  TAL+  ++GA+
Sbjct: 40  LTGKVALVTGSSGGIGYVTALELARKGAK 68


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 418 QLVGKTALITGCNTGIGKETALDFYK 495
           +L GKT LITG ++GIGK TA +  K
Sbjct: 3   RLDGKTILITGASSGIGKSTAFEIAK 28


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 406 ISTVQLVGKTALITGCNTGIGKETALDFYKRGA 504
           + + +L  K  L+TG ++GIGK  A+ F + G+
Sbjct: 35  VGSGKLAEKKTLLTGGDSGIGKAAAVMFAREGS 67


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 612 CDLTSLKSVREFAQNILDTEP 674
           CDL+S+ SVR+FA   +D  P
Sbjct: 135 CDLSSMLSVRKFATKWIDCTP 155


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 409 STVQLVGKTALITGCNTGIGKETALDFYKRGA 504
           S   L GKT LITG + GIG   A  F   G+
Sbjct: 3   SMFSLKGKTTLITGGSGGIGFSIAKAFAAAGS 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,235
Number of Sequences: 5004
Number of extensions: 52592
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)