Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021883
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    34   0.001
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   1.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.9  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   2.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.9  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   5.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   5.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   5.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   6.7  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -1

Query: 222 SICFEQSAARSSADWAHPISAVLPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPP 43
           S  F  S A+++  + H  + + P+  P     P P   SPI    +   P  P  P PP
Sbjct: 45  SYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPP 104


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 156 LPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYT 37
           + + WP AA   +P   + I   A  + P+    P P YT
Sbjct: 131 MAIAWPYAAVYTDPAFAASIFHAAATSLPLHYPPPPPVYT 170


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 87  ALYTRP-VAPALPEPPYTILAP 25
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 87  ALYTRP-VAPALPEPPYTILAP 25
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 87  ALYTRP-VAPALPEPPYTILAP 25
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 87  ALYTRP-VAPALPEPPYTILAP 25
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 87  ALYTRP-VAPALPEPPYTILAP 25
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 87  ALYTRP-VAPALPEPPYTILAP 25
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 87  ALYTRP-VAPALPEPPYTILAP 25
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 87  ALYTRP-VAPALPEPPYTILAP 25
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 559 WADSGVQECFGRSNEYQLNDSAKYFLN 639
           W+D   Q  FGR N+  +  +  Y LN
Sbjct: 404 WSDGNQQIAFGRGNKGFVAFTIGYDLN 430


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 559 WADSGVQECFGRSNEYQLNDSAKYFLN 639
           W+D   Q  FGR N+  +  +  Y LN
Sbjct: 405 WSDGNQQIAFGRGNKGFVAFTIGYDLN 431


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 559 WADSGVQECFGRSNEYQLNDSAKYFLN 639
           W+D   Q  FGR N+  +  +  Y LN
Sbjct: 405 WSDGNQQIAFGRGNKGFVAFTIGYDLN 431


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 106 LTDLSACALHASCRSGTTGATLH 38
           L D S C   A+C+  TT  T H
Sbjct: 64  LCDSSPCLNGATCQDHTTHYTCH 86


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 261 FDAEYHSLSSSYRSICFEQSAARSSADWAHPIS 163
           F   +H  S S      EQSAA ++A  + P+S
Sbjct: 10  FYGSHHHQSGSVAGHHHEQSAAAAAAYRSFPLS 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,584
Number of Sequences: 336
Number of extensions: 3269
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)