Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021883
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 71 1e-13
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 59 6e-10
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 28 1.0
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 1.8
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 27 1.8
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 27 2.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.1
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 26 4.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.5
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 26 5.5
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.5
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 7.2
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 7.2
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 25 7.2
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 7.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 7.2
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 7.2
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 9.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 9.5
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 9.5
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 70.9 bits (166), Expect = 1e-13
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = +2
Query: 251 SASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAILRAM 430
S DIK+LLLGAG+SGK+TI+KQM++++ GF+ KQYR +++ N I SL +L AM
Sbjct: 70 SGGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAM 129
Query: 431 PNLGI 445
N +
Sbjct: 130 DNSNV 134
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 58.8 bits (136), Expect = 6e-10
Identities = 31/92 (33%), Positives = 57/92 (61%)
Frame = +2
Query: 170 GCAQSAEERAADCSKQIDR*ELEREWYSASKDIKLLLLGAGESGKSTIVKQMKIIHESGF 349
G ++S E + + +I++ ++E K K+LLLGA +SGKSTI KQ+KI++++GF
Sbjct: 6 GLSESGESKKLN--SKIEK-QIENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKNGF 62
Query: 350 TNEDFKQYRPVVYSNTIQSLVAILRAMPNLGI 445
+ E+ + PV+ N ++S +++ + GI
Sbjct: 63 SQEEIMTFIPVIRRNLLESAKTLVKIIVQKGI 94
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 245 ILFQVLIDQFASSSPLHALRPTGRTPY 165
ILF LI +SSS LH L P+G PY
Sbjct: 183 ILFNALISILSSSSTLHKLYPSG-LPY 208
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 107 SAPGSGVGAACGHSIGRTADMGCAQSAEERA-ADCS 211
+A G G+G+A GH++G G + S A AD S
Sbjct: 64 TAAGVGIGSAIGHTVGSVITGGFSGSGSNNAPADTS 99
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/26 (34%), Positives = 22/26 (84%)
Frame = +2
Query: 254 ASKDIKLLLLGAGESGKSTIVKQMKI 331
++K++++L+LG +GK+TI+ ++K+
Sbjct: 18 SNKEMRILMLGLDAAGKTTILYKLKL 43
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +2
Query: 125 VGAACGHSIGRTADMGCAQSAEERAADCSKQIDR*ELEREWYSASKDIKLLLLGAGESGK 304
VG A SI R +G Q+ DC + +L EWY+ +K K LL GE +
Sbjct: 93 VGPATDDSIRR---LGFQQT---HGKDCGRGEVLADLIEEWYTTTKQHKPLLFLVGEKHR 146
Query: 305 STIVKQM 325
I +++
Sbjct: 147 DIIQRKL 153
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 171 PISAVLPMLWPQAA--PTPEPGALSPISQHALYTRPVAPALPEPP 43
P S + P+ P A P P P P+ + ++ PV P PP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = -1
Query: 267 MSFDAEYHSLSSSYRSICFEQSAARSSADWAHPISAVLPMLWPQAAPTPEPGALSPISQH 88
M D E+ S + QS S + +S + P L+P P PG +S + H
Sbjct: 55 MEDDLEFCPSLSDEELVSIYQSTGLSPTSSSPSLSPMTPNLYPNVLPNVHPG-VSNYTHH 113
Query: 87 AL 82
L
Sbjct: 114 PL 115
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/78 (26%), Positives = 30/78 (38%)
Frame = -1
Query: 282 NNNSLMSFDAEYHSLSSSYRSICFEQSAARSSADWAHPISAVLPMLWPQAAPTPEPGALS 103
NNN+L + + SSS + S S P M Q++ E S
Sbjct: 14 NNNALEKTSSNEATSSSSTQVSSLSASGISVSTPRVSPFEPERNMQ-VQSSQHLEANVQS 72
Query: 102 PISQHALYTRPVAPALPE 49
P+S Y P A A+P+
Sbjct: 73 PVSSQTTYATPSAYAVPQ 90
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 156 LPMLWPQAAPTPEPGALS-PISQHALYTRPVAPALPEPP 43
LPM P A P P ++ P+ P+ PA P PP
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +2
Query: 260 KDIKLLLLGAGESGKSTIVK 319
+++++LLLG +GK+TI+K
Sbjct: 15 REVRVLLLGLDNAGKTTILK 34
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -1
Query: 129 PTPEPGALSPISQHALYTRPVAPALPEPPY--TILAPN 22
P P PG + A T P AP +P P+ TI A N
Sbjct: 290 PPPPPGMVMASPSPAAATIPGAPVMPNIPFYQTINAQN 327
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 251 SASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNE 358
S I + +G GKST+VK + +H F NE
Sbjct: 19 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNE 54
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 285 VLANRARVL*SNR*KLSMKVDSQMKTSNSTGPWS 386
+LAN R++ SN K+ D Q + S GPW+
Sbjct: 1 MLANALRLV-SNSKKIKYDYDIQKENSVQVGPWT 33
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 90 HALYTRPVAPALPEPP 43
+A Y RPVAP +P+ P
Sbjct: 137 NAEYNRPVAPVIPDAP 152
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 230 ELEREWYSA-SKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNE 358
+L +++ A SK+ L+LLG SGK+T + Q + E G+T++
Sbjct: 514 KLRKQFLEAVSKNQILVLLGETGSGKTTQITQ--YLAEEGYTSD 555
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -1
Query: 165 SAVLPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYT--ILAPNTRT 13
+A P+ P A P P A + RP APA+ P T AP T T
Sbjct: 995 AATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTST 1047
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/85 (22%), Positives = 39/85 (45%)
Frame = -1
Query: 297 DSPAPNNNSLMSFDAEYHSLSSSYRSICFEQSAARSSADWAHPISAVLPMLWPQAAPTPE 118
D P P + ++ ++Y + S+ Y+++ + ++A +P +A +P P+
Sbjct: 320 DIPPPYSTPSVAGASDYSTPSAGYQTVQTTTTTTEAAAA-QYPQAA-----FPPPPVMPQ 373
Query: 117 PGALSPISQHALYTRPVAPALPEPP 43
P A + + A A A+P PP
Sbjct: 374 PAAAAVTTPVAAPVAAAAAAVPVPP 398
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 344 GFTNEDFKQYRPVVYSNTIQSLVAILRAMPNLGIIYGNRD-RESDGKM 484
GF +E+ KQYR +Y+ + L+ ++ M N I + R + DG++
Sbjct: 701 GFVDEEMKQYR--LYT-VVPQLLGLIEEMTNWYIRFNRRRLKGEDGEI 745
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = -1
Query: 153 PMLWPQAAPTPEPGALSPISQHALYTRPV----APALPEPPYT 37
P + PQ P P A +P +H PV +P++P P T
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLT 763
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 461 LYCHR*CPSWAWH 423
LY ++ CPSW W+
Sbjct: 626 LYYYQGCPSWTWY 638
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,315
Number of Sequences: 5004
Number of extensions: 55921
Number of successful extensions: 221
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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