Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021882
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    33   0.18 
05_03_0258 - 11153709-11156090                                         31   0.94 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.6  
03_05_0164 - 21432289-21432355,21433612-21433699,21433859-214339...    30   2.2  
08_01_0038 - 282431-283954                                             28   6.6  

>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = -2

Query: 545 AQLLGRAIGAGLSLLRQLAKGGCAARRL 462
           A L G A G GL L RQL++GGC  +RL
Sbjct: 85  ASLPGDANGRGLLLARQLSRGGCGEQRL 112


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 584 NINAYNLPFAIQAAQLLGRAIGAGLSLLRQLAKGGCAARRLSWVT 450
           N+N YNL F +   +    A+   L +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAM---LEMLEEMSRSGCTPNRVTWNT 431


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 398 ITIHWPSFYNVV-TGKTLALPNLIALQH 478
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>03_05_0164 -
           21432289-21432355,21433612-21433699,21433859-21433954,
           21434284-21434563
          Length = 176

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +3

Query: 30  PSPIISSFLELGRRKLSMQPKFVAAQKMLLKQKPSKHS*MDCSVLLL*AFILRWKRVCIA 209
           P P+  S   + +R+ S  P       + L ++PS    +D S+ L  A + +W+R    
Sbjct: 27  PPPLSPSTTRIPQRRPSPAPLPCTQALLDLDREPSS---LDQSLRLT-AVVGQWRRGDPV 82

Query: 210 HNNCMSCPSIWATLS 254
           + +C SCP+ +  LS
Sbjct: 83  YMHCYSCPTAYGELS 97


>08_01_0038 - 282431-283954
          Length = 507

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 530 FPTVAQ-PEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPL*IKRIDRDRVECCSS 706
           FP++A+ P  R   C + Y VK R   LL+QLI     + R + L     + D ++   S
Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286

Query: 707 LEQE 718
           ++QE
Sbjct: 287 IQQE 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,099,471
Number of Sequences: 37544
Number of extensions: 488164
Number of successful extensions: 1227
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)