Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021882
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decappi...    30   1.9  
Z83226-4|CAI79261.2|  206|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF098994-3|AAT81188.1|  455|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF098994-2|AAT81187.1|  505|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z70213-8|CAA94170.4|  253|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70213-7|CAH19092.1|  199|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decapping
           enzyme protein 1 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 446 LALPNLIALQHIPLSPAGVIARGPHRSPFPT-VAQPEWRMANCKR*YFV 589
           LA  NL  LQ I ++ + ++ + P  + +    A+ EW  +NC+  +FV
Sbjct: 12  LAAKNLAQLQKIDIAASKILDKMPFAAIYHIDAARKEWNQSNCEGTFFV 60


>Z83226-4|CAI79261.2|  206|Caenorhabditis elegans Hypothetical
           protein F43D2.6 protein.
          Length = 206

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 89  WLHRQFSSAQFQKRRNDG*WFPL 21
           WLHR+ +  Q++   ND  W+P+
Sbjct: 116 WLHRRRNPQQYESVHNDNGWYPI 138


>AF098994-3|AAT81188.1|  455|Caenorhabditis elegans Hypothetical
           protein T06A4.3b protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 7   GRSSTKGNHHPSFLRFWNWAEENCRCSQNLWRRRKCC 117
           G   T+ + +P  +R W       +C +++W R +CC
Sbjct: 230 GYEFTRSSTNPH-VRLWRKNRSKMQCRKDIWGRNRCC 265


>AF098994-2|AAT81187.1|  505|Caenorhabditis elegans Hypothetical
           protein T06A4.3a protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 7   GRSSTKGNHHPSFLRFWNWAEENCRCSQNLWRRRKCC 117
           G   T+ + +P  +R W       +C +++W R +CC
Sbjct: 230 GYEFTRSSTNPH-VRLWRKNRSKMQCRKDIWGRNRCC 265


>Z70213-8|CAA94170.4|  253|Caenorhabditis elegans Hypothetical
           protein ZK930.3a protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 352 ADTAERDYFTLRERLITMQKQLEGTQKYINE 260
           A T   DYF  R  L+    +LE T+K+I E
Sbjct: 27  AKTKVDDYFAKRNELLEELSELENTEKFIKE 57


>Z70213-7|CAH19092.1|  199|Caenorhabditis elegans Hypothetical
           protein ZK930.3b protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 355 LADTAERDYFTLRERLITMQKQLEGTQKYINE 260
           ++ T   DYF  R  L+    +LE T+K+I E
Sbjct: 2   ISRTKVDDYFAKRNELLEELSELENTEKFIKE 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,006
Number of Sequences: 27780
Number of extensions: 407960
Number of successful extensions: 1042
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)