Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021882
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28430.1 68418.m03453 hypothetical protein                          32   0.45 
At3g26670.3 68416.m03334 expressed protein                             25   3.8  
At3g26670.2 68416.m03333 expressed protein                             25   3.8  
At3g26670.1 68416.m03332 expressed protein                             25   3.8  
At5g61250.2 68418.m07684 glycosyl hydrolase family 79 N-terminal...    29   4.2  
At5g61250.1 68418.m07683 glycosyl hydrolase family 79 N-terminal...    29   4.2  
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00...    29   4.2  
At3g52900.1 68416.m05830 expressed protein contains Pfam profile...    28   5.5  
At5g08710.1 68418.m01035 regulator of chromosome condensation (R...    28   7.3  
At1g22210.1 68414.m02777 trehalose-6-phosphate phosphatase, puta...    28   7.3  
At1g27020.1 68414.m03294 expressed protein                             27   9.6  

>At5g28430.1 68418.m03453 hypothetical protein
          Length = 486

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 65  QKKTVDAAKICGGAENVVKTET-QQTFVNGLLGFITLGIYTPLEARVYCSQ*LHEL 229
           ++K  +A KIC G EN+ +  T     + G +G + L   T LE+R Y     H L
Sbjct: 193 RRKYAEAEKICRGGENIFEDRTASANLLGGCVGPLLLPPDTLLESRKYAETASHFL 248


>At3g26670.3 68416.m03334 expressed protein
          Length = 441

 Score = 25.4 bits (53), Expect(2) = 3.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 416 SFYNVVTGKTLALPNLIALQHIPLSPAGVIARGPHRSPFPTVAQPEWRMAN 568
           +F  VV  K + +  L+A   I L    ++A G H+SP  T  Q   + +N
Sbjct: 94  AFAYVVLNKMVTVKVLVATAFIVLGNVFLVAFGNHQSPVFTPEQLAEKYSN 144



 Score = 21.8 bits (44), Expect(2) = 3.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 353 QSGGARYPIRPIVSRIT 403
           Q GG + P++PI+   T
Sbjct: 38  QDGGGKMPLKPIIHNQT 54


>At3g26670.2 68416.m03333 expressed protein
          Length = 441

 Score = 25.4 bits (53), Expect(2) = 3.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 416 SFYNVVTGKTLALPNLIALQHIPLSPAGVIARGPHRSPFPTVAQPEWRMAN 568
           +F  VV  K + +  L+A   I L    ++A G H+SP  T  Q   + +N
Sbjct: 94  AFAYVVLNKMVTVKVLVATAFIVLGNVFLVAFGNHQSPVFTPEQLAEKYSN 144



 Score = 21.8 bits (44), Expect(2) = 3.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 353 QSGGARYPIRPIVSRIT 403
           Q GG + P++PI+   T
Sbjct: 38  QDGGGKMPLKPIIHNQT 54


>At3g26670.1 68416.m03332 expressed protein
          Length = 441

 Score = 25.4 bits (53), Expect(2) = 3.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 416 SFYNVVTGKTLALPNLIALQHIPLSPAGVIARGPHRSPFPTVAQPEWRMAN 568
           +F  VV  K + +  L+A   I L    ++A G H+SP  T  Q   + +N
Sbjct: 94  AFAYVVLNKMVTVKVLVATAFIVLGNVFLVAFGNHQSPVFTPEQLAEKYSN 144



 Score = 21.8 bits (44), Expect(2) = 3.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 353 QSGGARYPIRPIVSRIT 403
           Q GG + P++PI+   T
Sbjct: 38  QDGGGKMPLKPIIHNQT 54


>At5g61250.2 68418.m07684 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           GI:8918740 from [Scutellaria baicalensis]
          Length = 539

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 98  GGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSQ 214
           GGA N    +  +TF+N       LGI +    +VYC Q
Sbjct: 318 GGAFNSGGRQVSETFINSFWYLDQLGISSKHNTKVYCRQ 356


>At5g61250.1 68418.m07683 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           GI:8918740 from [Scutellaria baicalensis]
          Length = 539

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 98  GGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSQ 214
           GGA N    +  +TF+N       LGI +    +VYC Q
Sbjct: 318 GGAFNSGGRQVSETFINSFWYLDQLGISSKHNTKVYCRQ 356


>At3g06210.1 68416.m00714 expressed protein contains Prosite
           PS00616: Histidine acid phosphatases phosphohistidine
           signature;
          Length = 840

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 139 IRKWIARFYYFRHLYSAGSACVLLTIIA*VAHRYGQL 249
           I  +++R  Y+  L SA SACV L+    V H YG +
Sbjct: 220 ISSYVSRILYWLQLLSA-SACVALSSYKLVMHNYGDV 255


>At3g52900.1 68416.m05830 expressed protein contains Pfam profile
           PF04949: Family of unknown function (DUF662)
          Length = 164

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 349 DTAERDYFTLRERLITMQKQLEGTQKYINEQ*DRVAHIDGQLMQLL 212
           D A RD  +L +     +K+ + T +  NE+    AH+   LM+LL
Sbjct: 97  DMANRDIKSLAQSCQKKEKEYKDTLEAFNEKNKEKAHLVSMLMELL 142


>At5g08710.1 68418.m01035 regulator of chromosome condensation
           (RCC1) family protein / UVB-resistance protein-related
           contains Pfam PF00415 : Regulator of chromosome
           condensation (RCC1); similar to UVB-resistance protein
           UVR8  (GI:10177674) {Arabidopsis thaliana}
          Length = 434

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 86  AKICGGAENVVKTETQQTFVNGLLGFITLGI 178
           A  CGGA  +  TET++ F  GL     LG+
Sbjct: 86  AVACGGAHTLFLTETRRVFATGLNDCGQLGV 116


>At1g22210.1 68414.m02777 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) GI:2944180 from [Arabidopsis thaliana];
           contains Pfam profile PF02358: Trehalose-phosphatase
          Length = 320

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -3

Query: 385 RANWVPGSPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQ*DRVAHIDGQLMQLL*A 206
           R++W+   P   D  E+       + I M    +GT   I E  DR A+I  ++ +++  
Sbjct: 41  RSSWIALHPSALDMFEQIMRDAEGKQIIMFLDYDGTLSLITEDHDR-AYITDEMREVVKE 99

Query: 205 IHTRFQRSI 179
           + T F+ +I
Sbjct: 100 VATYFKTAI 108


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 436 WENPGVTQLNRLAAHPPFASW 498
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,395,177
Number of Sequences: 28952
Number of extensions: 377825
Number of successful extensions: 985
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)