Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021881
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    33   0.002
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    33   0.002
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.50 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
 Frame = +3

Query: 258 LTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIG 413
           ++ T V P++ VK  LQV        + ++YK +++ F    +E+G     +G     I 
Sbjct: 23  ISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82

Query: 414 YSMQGLCKFGFYEVFKVAYAGMLDDETAY 500
           Y       F F + +K  + G +D  T +
Sbjct: 83  YFPTQALNFAFKDKYKQVFLGGVDKNTQF 111


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
 Frame = +3

Query: 258 LTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIG 413
           ++ T V P++ VK  LQV        + ++YK +++ F    +E+G     +G     I 
Sbjct: 23  ISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82

Query: 414 YSMQGLCKFGFYEVFKVAYAGMLDDETAY 500
           Y       F F + +K  + G +D  T +
Sbjct: 83  YFPTQALNFAFKDKYKQVFLGGVDKNTQF 111


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 293 HQVEGHHGRVGQTHDRTPPTPQRAKYLGDP 204
           HQ + H+G   Q   +T    Q+++  GDP
Sbjct: 22  HQHQQHYGAAVQVPQQTQSVQQQSQQAGDP 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 292  TRSRGTTAVWVRPMTEHHQLRKERNI*AIQIHRTPWVPQQTPP 164
            T S G++    RP++EH     + +   ++  RT W  QQ PP
Sbjct: 1317 TVSSGSSEDHRRPLSEHIYSSIDSDYSTLE--RTAWRQQQPPP 1357


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 529 VCVGGIHRRHRPVAHGGG*GPYPNH 603
           VC+    RRHRPV    G   Y NH
Sbjct: 105 VCMRKCPRRHRPVCASNG-KIYANH 128


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 242 VFCHGSDPHGRGAPRPGEVSSP 307
           +FCH    H    P PGEV  P
Sbjct: 272 MFCHTGLGHYGHHPDPGEVDLP 293


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 101 GPRNGEFRAASSNEEN 54
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,242
Number of Sequences: 438
Number of extensions: 4629
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)