Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021880
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    89   7e-19
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    45   1e-05
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    32   0.063
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    32   0.063
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.25 
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    30   0.34 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    29   0.44 
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    28   1.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   4.1  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   7.2  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 88.6 bits (210), Expect = 7e-19
 Identities = 42/71 (59%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
 Frame = +1

Query: 256 ERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALN 432
           ERVKLL+Q Q  + +      RYKGI + F R   E+G++S WRGN ANV+RYFPTQALN
Sbjct: 49  ERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALN 108

Query: 433 FAFKDKYKQVF 465
           FAFKDK+K++F
Sbjct: 109 FAFKDKFKKMF 119



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +3

Query: 546 SLCFVYPLDFARTRLAADV--GKGDGQREFSGL 638
           SL FVY LD+ARTRLA D    K  G+R+F+GL
Sbjct: 146 SLLFVYSLDYARTRLANDAKSAKKGGERQFNGL 178



 Score = 33.9 bits (74), Expect = 0.021
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 191 FAKDFLAGGISAAVSKTAVAP 253
           F  DF+ GG+SAAVSKTA AP
Sbjct: 27  FFFDFMMGGVSAAVSKTAAAP 47



 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 292 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 471
           S +   ++++ G+VD + +  +  GL   +RG   +V+     + L F   D  K V L 
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225

Query: 472 G 474
           G
Sbjct: 226 G 226


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 38/68 (55%)
 Frame = +1

Query: 256 ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 435
           ER+K++ QVQ+       ++ Y  +    V+I   +GL+ F+RGN  N +R FP  A+ F
Sbjct: 42  ERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQF 94

Query: 436 AFKDKYKQ 459
           A  +  KQ
Sbjct: 95  ATFNMLKQ 102



 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 319 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 435
           YK I  A   I K +G+  F+RG  +N+++  P  ++ +
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +2

Query: 206 LAGGISAAVSKTAVAP 253
           L+GG++A VS+TAV+P
Sbjct: 25  LSGGVAATVSRTAVSP 40


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 319 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 465
           Y G  D   +I K +G    +RG    ++   P +AL FA  D Y +++
Sbjct: 45  YNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 316 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYK 456
           +Y G VD F +I K++ +L+ + G  A + R+    A  F    K +
Sbjct: 140 KYNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIR 186



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 558 VYPLDFARTRLAADVGKGDGQREFSGL 638
           +YPLD  +TR+   VGK D    F  L
Sbjct: 26  LYPLDVVKTRMQLSVGKSDYNGTFDCL 52


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 262 VKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAF 441
           ++  LQ Q  S   A    Y G +D F +  K +G    ++G   N+++  P+ A+++  
Sbjct: 359 IRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLV 415

Query: 442 KDKYKQ 459
            +  K+
Sbjct: 416 YENCKK 421


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 253 HERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALN 432
           HE V+  L+    S  I    +Y G++  F  +  EQG++  + G  A+++R  P   + 
Sbjct: 293 HEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACIL 349

Query: 433 F 435
           F
Sbjct: 350 F 350


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +1

Query: 295 KQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 462
           + ++A + YK  +    +I  + GLL FW G    + R   +  + F   +K  ++
Sbjct: 232 QSLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGIVFTVYEKVMEI 287


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 304 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 483
           A    Y    DAF +I K +GL +F+RG F ++        + F   + +K        K
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHV-GIQFPLYEYFKSFLDDFFGK 283

Query: 484 KTQF 495
           K+ F
Sbjct: 284 KSNF 287



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 325 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKK 486
           G + +   I   +G+   +RG    ++ Y P+ ++ F   +K K +F  GV+KK
Sbjct: 53  GTLSSMRTIFHNEGIAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF--GVNKK 104


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
 Frame = +1

Query: 274 LQVQHVSK-QIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP---TQALNFAF 441
           +QV    K + A     K + D  +      G + FW G F  + + F      AL    
Sbjct: 195 MQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLSQSFKLHLADALCLGV 254

Query: 442 KDKYKQVFLGGVDKKT 489
                 VF  G+D+KT
Sbjct: 255 SANGDMVFSSGIDRKT 270


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 40  YEITPNLLFKNQELVFRDPPSACAATPTSTY 132
           YE+  N  F N       PP AC+   TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 328 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 420
           +++    + + +GL  F+RG +  V  Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,755
Number of Sequences: 5004
Number of extensions: 44054
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)