Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021880
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 45 6e-05
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 40 0.002
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 39 0.003
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 38 0.009
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 37 0.016
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.022
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.050
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.067
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 33 0.20
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 33 0.20
SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 32 0.47
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 31 0.62
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 30 1.4
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 30 1.9
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 30 1.9
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.5
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7) 29 2.5
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_49099| Best HMM Match : rve (HMM E-Value=2e-08) 29 3.3
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 3.3
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.3
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 29 4.4
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28) 28 5.8
SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40) 28 5.8
SB_26302| Best HMM Match : Reg_prop (HMM E-Value=3.1e-06) 28 7.6
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 28 7.6
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 28 7.6
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 ERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALN 432
ERVKLL+Q Q + K D YKG++D R + +G LSFWRGN AN IRYFPTQALN
Sbjct: 31 ERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFWRGNLANCIRYFPTQALN 90
Query: 433 FAFKDKYKQVF 465
FAFKD+ K +F
Sbjct: 91 FAFKDQVKALF 101
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Frame = +3
Query: 546 SLCFVYPLDFARTRLAAD--VGKGDGQREFSGL 638
SL FVY LD+ RTRLA D VGK G+R+F+G+
Sbjct: 127 SLFFVYSLDYCRTRLANDAKVGKKGGERQFNGM 159
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +1
Query: 316 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 468
+YKG +D ++I K++G +S +G AN++R + F DK+K++++
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGF-DKFKELYV 297
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/68 (41%), Positives = 46/68 (67%)
Frame = +1
Query: 256 ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 435
ERVK+LLQ+Q + ++KG++ ++I KE+G+L +++GN NVIR FP A+ F
Sbjct: 56 ERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIFPYSAVQF 109
Query: 436 AFKDKYKQ 459
A ++YK+
Sbjct: 110 AAYEEYKK 117
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 197 KDFLAGGISAAVSKTAVAP 253
K LAGGI+ AVS+T+V+P
Sbjct: 36 KHLLAGGIAGAVSRTSVSP 54
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/77 (40%), Positives = 42/77 (54%)
Frame = +1
Query: 256 ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 435
+R+K+LLQVQ A+ GIV F + +E G+ S WRGN ANVI+ P + F
Sbjct: 158 DRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGNGANVIKIAPESGIKF 211
Query: 436 AFKDKYKQVFLGGVDKK 486
+K K+ L G D K
Sbjct: 212 FAYEKAKK--LVGSDTK 226
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +1
Query: 274 LQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 453
L+V I +Y+G++ A I +++G+ SF+RG F +++ P ++ A +
Sbjct: 251 LEVLKTRLAIRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYETL 310
Query: 454 KQVFL 468
K +L
Sbjct: 311 KNFYL 315
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 274 LQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFA 438
L+V V Q+ + G++ F + K +G+ +FW+GN + IR FP A+ +A
Sbjct: 79 LEVVKVLAQVGTQEAKPGLIRTFASVYKREGIKAFWKGNGVSCIRLFPYSAVQYA 133
Score = 35.5 bits (78), Expect = 0.038
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 256 ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 417
E +K L VQHV+K A YKG+ A I +E+G+L+ ++G + + FP
Sbjct: 174 EVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKGVTPSFLGLFP 224
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +1
Query: 316 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 459
+Y G+ +I +++GL +++GN N++R P A+ FA +++K+
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +1
Query: 301 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 465
I ++Y G+++AF RI +++G+ +F+RG +I P ++F + K+ F
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCKKAF 73
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 331 VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFW 498
+DA ++IP+ +GL S WRG ++ P + F D+ K + G + +T W
Sbjct: 64 IDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQLK-ISYGFKNNETNLW 118
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 256 ERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 384
ERVKLL+Q Q + K YKG+VD +R + +G+ SFWR
Sbjct: 32 ERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 319 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 468
Y + +A R+ KE+G+L+ WRG +R A A + KQ+ L
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQLLL 84
Score = 34.7 bits (76), Expect = 0.067
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 319 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV---FLGG 474
YKG +D RI + +G+ + W+G R P L F F ++ + F GG
Sbjct: 133 YKGTMDVLARIVRNEGVFALWKGFTPYYFRIGPHTVLTFIFLEQLNRAANYFYGG 187
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +1
Query: 328 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 462
++ AF I + +GLL++++GN A ++R FP A+ F + Y +V
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKV 57
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 543 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCIS 653
T+ YPLD R+RLA V + G + CIS
Sbjct: 77 TACACTYPLDMVRSRLAFQVAQDQGYTTITQTIRCIS 113
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +1
Query: 262 VKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 435
VK+ LQ+Q +K+ + Y+G VD V++ + +GL ++GN +R P A+ F
Sbjct: 57 VKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGFAVYF 113
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 316 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 435
RYKG++D ++ KE+G++ F RG + ++R F Q L F
Sbjct: 170 RYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGF-LQVLRF 208
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 34.7 bits (76), Expect = 0.067
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 319 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF--LGGVDKKT 489
Y+G++ + KE+G+ +F+R + P Q L+F + ++ LGG D KT
Sbjct: 32 YRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYDPKT 90
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 349 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 462
+P+E L W G F++VI F A+N AF+++YK++
Sbjct: 272 LPREVYLFYSWIGAFSSVINPFIYGAMNPAFREEYKKI 309
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/63 (20%), Positives = 32/63 (50%)
Frame = +1
Query: 277 QVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYK 456
++Q+ + A++ YK +D F ++ + +G + +RG ++ P +A+ D +
Sbjct: 940 RMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGVSPEKAIKLTTNDFVR 999
Query: 457 QVF 465
+F
Sbjct: 1000 GIF 1002
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 256 ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 387
E +K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 443 EVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 349 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 462
+P+E +L W G ++VI F A+N F+D+YK++
Sbjct: 139 LPREVYVLYTWLGTLSSVINPFIYGAMNPVFRDEYKKL 176
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 256 ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 387
ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 182 ERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 225 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 91
A++PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 538 ADLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 225 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 91
A++PP R +A + FD+ + I TR RGG ++ WG+
Sbjct: 1265 ADLPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 371
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 371
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 371
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 371
A+ S RQQ R RP GY +R R YP+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 325 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 462
G+V + G +RGN A ++R P ++ F ++YK++
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQFTSHEQYKKL 46
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 271 LLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 387
L++++ + +I YK + AF +I K++G L W G
Sbjct: 137 LVKIRFQAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTG 175
>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 272
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 637 RPENSRWPSPLPTSAARRVRAKSRGYTK 554
RP +SR S P+SA+RR ++SRG +
Sbjct: 221 RPSSSRPSSARPSSASRRASSRSRGLAR 248
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +1
Query: 256 ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 435
E VK LQ+ + AA Y+G +D + K G+L +RG + + P ++ F
Sbjct: 62 EYVKTQLQLD----EKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASVRF 117
Query: 436 AFKDKYKQVFLGGVDKKTQF 495
A + K K TQF
Sbjct: 118 AVFEYLKNKMADENGKLTQF 137
>SB_49099| Best HMM Match : rve (HMM E-Value=2e-08)
Length = 553
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -3
Query: 279 LEQQLDTLVGATAVLETAAEIPPARKSLA----NATGSARFDIL 160
L+QQ++ V A + AA+ PP+ K A NATG + ++L
Sbjct: 144 LDQQIEETVKACVACQEAAKAPPSSKQAAWATPNATGKSPSELL 187
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 371
A+ S RQQ R RP +GY +R R YP+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 316 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 426
+Y G D +I G+ +F +G A ++R FPT A
Sbjct: 399 KYNGYADCVKKIYISGGVSAFGQGLLATILRGFPTNA 435
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 319 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 435
+KG +D F++ + +GL ++G + ++ P+ AL F
Sbjct: 62 FKGAMDCFMKTVRLEGLRGLYKGMLSPLLMATPSTALTF 100
>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 352 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 468
P+E L W G ++VI F +N F++++K+++L
Sbjct: 815 PRELYLFYSWLGALSSVINPFIYGVMNPMFREEFKRIYL 853
>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
Length = 343
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 349 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 465
+P+E L + G ++VI F A+N F+++YK+VF
Sbjct: 263 LPRELYFLYTYVGVLSSVINPFIYGAMNPMFREEYKKVF 301
>SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)
Length = 368
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 349 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 462
+P+E +L + G ++VI F A+N FK++YK++
Sbjct: 267 LPREVYVLYSFLGGLSSVINPFIYGAMNPIFKEQYKKI 304
>SB_26302| Best HMM Match : Reg_prop (HMM E-Value=3.1e-06)
Length = 117
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +1
Query: 325 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY--KQVFLGGVDKKTQFW 498
G++ + V ++ + W G + +Y N+ +D V G+DKK Q W
Sbjct: 17 GLIQSQVTAIEQDKMGHLWMGTIGGLAKYDGHTFTNYTIRDGLLNNSVTALGIDKKNQIW 76
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 256 ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 390
ER +L+ Q Q +D RY+G +D+F + +G L +RG+
Sbjct: 286 ERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGD 330
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 247 STH--ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 417
STH + V+ L VQ +S + ++ Y GIV A RI E+G+ ++G +++ P
Sbjct: 45 STHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGIRGLYKGLVPSLVSIAP 101
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 ERVKLLLQVQHVSKQIAADQRYK-GIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 417
E +K LQ QH + I+ K G++D ++I + G +RG A R P
Sbjct: 128 ELIKCRLQAQHQTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFRGMTATWAREVP 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,261,492
Number of Sequences: 59808
Number of extensions: 387033
Number of successful extensions: 1279
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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