Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021879
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    77   3e-15
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.8  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   4.9  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   6.4  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   6.4  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   6.4  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   8.5  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   8.5  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
 Frame = +1

Query: 256 YEADAVLMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVLLVFGIVAIFVKG-KV 432
           + A  +L AV IT  V + LT F  Q+KWDF+ +GG L  +   L++  ++  FV     
Sbjct: 143 FSARIILEAVFITLGVFVALTAFTFQSKWDFSRLGGFLYVSLWSLILTPLIFFFVPSTPF 202

Query: 433 ITLVYASLGALIFSIYRVYDTQLMMGASTSTASRPEEYICAALNLYLDIINIFLGIL 603
           I + +A  G L+F  Y ++DT  ++   +     PEE+I ++L LYLD IN+F+ IL
Sbjct: 203 IDMAFAGFGTLVFCGYILFDTYNILHRYS-----PEEFIMSSLMLYLDFINLFIRIL 254



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 122 FIVLIVCLIAMACCPDVRRKAPTNFIFLAIFTAAQSFLLG 241
           F + +V L  +   P      P N+IFL +FTA +   LG
Sbjct: 101 FFISLVVLFGLIMKP---YSYPRNYIFLFLFTALEGLTLG 137


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 511  ASTSTASRPEEYICAALNLYLDIINIFLGIL 603
            A ++T  +  E++    N +LD+ NIF  I+
Sbjct: 1638 AESATNKKASEFVILCFNAFLDVSNIFPAIV 1668


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 370 LCATIVLLVFGIVAIFVKGKVITLVYASLGALI-FSIYRVYDTQLMMGAS 516
           +   I LLVF  ++ F+K + I L+ A    +I F +Y   D    +G S
Sbjct: 333 ISGAIWLLVFAFISDFLKNRGIVLIAAISTTMIGFIVYGSIDIMNHIGVS 382


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 283 LPSAPHPLRRPCANAEQEALRCREDGQEYEVRRSFASHVGTARHRDETDYQH 128
           L SA H LR      EQ  L+CR+      ++  +A  +   RH D  D+ +
Sbjct: 154 LKSALHELRD-----EQVQLQCRQAPSNQALKSLYAKDMHLFRHLDPADFPY 200


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 441 ERYDLTFHEYRHDTEYKEDDGGAEQHAA 358
           E +++TFH+Y    E K  D G+   A+
Sbjct: 212 ESHNMTFHDYEPSIENKNYDFGSSHSAS 239


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 445 YASLGALIFSIYRVYDTQLMMGASTSTASRPEEYI 549
           Y+SLG+L+   +R Y  +        T  RP+ Y+
Sbjct: 265 YSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYL 299


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 438 RYDLTFHEYRHDTEYKEDD 382
           +YDL F++   DTE KE D
Sbjct: 538 QYDLEFYDLDFDTEKKEPD 556


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 446 YTSVMTLPFTNIATIPNTRRTMVAQS 369
           Y SV  +PF NI+++P+T   +  Q+
Sbjct: 734 YGSVEQIPFKNISSLPDTYTKLKPQA 759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,979
Number of Sequences: 5004
Number of extensions: 50035
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)