Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021879
(604 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022) 118 4e-27
SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05) 65 4e-11
SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021) 41 7e-04
SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053) 33 0.24
SB_37844| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024) 31 0.72
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23) 29 3.8
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 28 5.1
SB_34635| Best HMM Match : PE (HMM E-Value=0.82) 28 6.7
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40) 27 8.8
SB_52550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31) 27 8.8
SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09) 27 8.8
>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
Length = 192
Score = 118 bits (284), Expect = 4e-27
Identities = 58/110 (52%), Positives = 77/110 (70%)
Frame = +1
Query: 274 LMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVLLVFGIVAIFVKGKVITLVYAS 453
+M +T + + + L ++DFTMMGG L A IVL+ FG +AIF +V+ +VYAS
Sbjct: 75 VMYAQLTLILKIVIILLFWNFQYDFTMMGGFLFVALIVLICFGFLAIFFHNRVVQIVYAS 134
Query: 454 LGALIFSIYRVYDTQLMMGASTSTASRPEEYICAALNLYLDIINIFLGIL 603
LGAL+F++Y VYDTQ+MMG + PEEYI AALNLYLDI+N+FL IL
Sbjct: 135 LGALLFALYLVYDTQIMMGGGKMYSISPEEYIFAALNLYLDIVNMFLYIL 184
>SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)
Length = 179
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/71 (46%), Positives = 49/71 (69%)
Frame = +1
Query: 391 LVFGIVAIFVKGKVITLVYASLGALIFSIYRVYDTQLMMGASTSTASRPEEYICAALNLY 570
L+FG + F + ++ L YA LGAL+FS + V+DT ++M + PEEYI A++NLY
Sbjct: 107 LLFGFM--FFQSDILELAYAVLGALLFSAFIVFDTHMLMNKMS-----PEEYILASINLY 159
Query: 571 LDIINIFLGIL 603
+DIIN+F+ IL
Sbjct: 160 MDIINLFIQIL 170
>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
Length = 344
Score = 41.1 bits (92), Expect = 7e-04
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +1
Query: 355 MGGVLLCATIVLLVFGIVAIFVKGKVITLVYASLGALIFSIYRVYDTQ-LMMGASTST-- 525
+GGV++ + L + A+ + IT Y G +IF + +YDTQ ++ A T
Sbjct: 251 LGGVVMASLGSLFLPATTAVGAGLQAIT-TYG--GLVIFGGFLLYDTQKIIRQAETHPLY 307
Query: 526 ASRPEEYICAALNLYLDIINIFLGIL 603
ASRP + I A++ +Y+D INIF+ I+
Sbjct: 308 ASRPYDPINASIGIYMDTINIFIRIV 333
>SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053)
Length = 321
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 118 SLHSADSLSHRDGVLSRRETQSSDELHIPGHLHG 219
S+H SH G + R+++S D++H+ GH+ G
Sbjct: 245 SVHCPALTSHLGGAIHLRDSESEDDVHLDGHVAG 278
>SB_37844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 28 RRLCLSSESIVKFIV*KFEHREIVSGILTKSLHSADSLSHRDGVLSRRETQSSDELHI-P 204
RR CL + + ++ KF I+S + +KS H+A + S ++ +S R+ + D++ I
Sbjct: 39 RRNCLRRQLVQFELLKKFTRVSIISKLNSKSSHTAINWSQQELRVSSRDKHAFDDMEIMA 98
Query: 205 GH 210
GH
Sbjct: 99 GH 100
>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
Length = 1272
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 271 VLMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVLLVFGIVAIFV 420
++M +GI A+C T T+ D + +GG +L + LL+ I+A+F+
Sbjct: 913 IIMMIGIILAMCGASTFDTPSTRGDLSDLGGKVLMGSAGLLI--ILALFI 960
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = -2
Query: 537 GPRCCTCACPHHQLGVVDAVNGEYESAQGRVHERYDLTFHEYRHDTEYKEDDGGAEQHAA 358
GP C C CP ++ NG+ G+ H + H+ + +++ +QH
Sbjct: 210 GPCCFKCKCPANRY----VYNGK-SCGDGKQHHHHKQHHHQQQRHHHHEQHHHQQQQHHH 264
Query: 357 HHGEV 343
HH +
Sbjct: 265 HHEHI 269
>SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 325 ALQTKWDFTMMGGVLLCATIVLLV-FGIVA-IFVKGKVITLVYASLG 459
AL K + ++ + C T+ + +G +A + V G+VI ++YA LG
Sbjct: 227 ALSAKPQWNILNSIYFCMTVTTTIGYGSLAPVTVPGRVICVIYALLG 273
>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1232
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 450 RVHERYDLTFHEYRHDTEYKEDDGGAEQHAAHHGEVPLG 334
R H+ L ++ E++E DG QHA + GEV LG
Sbjct: 667 RGHDVQSLKALQWLKYVEHREGDGVFIQHAGNRGEVRLG 705
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -1
Query: 307 GTRPPLCQLPSAPHPLRRPCANAEQEAL 224
GT P C P PHPL RPCA AL
Sbjct: 827 GTCPTPCYGP-VPHPLLRPCAPPPATAL 853
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -2
Query: 540 LGPRCCTCACPHHQLGV---VDAVNGEYESAQGRVHERYDLTFHEYRHDTEYKEDDGGAE 370
+ P C H +G+ VD + YE GR L + ++ ++D G+
Sbjct: 649 MSPHCTRHPDEHRMVGLRLSVDVRSSLYEGGLGRDLRSQGLVPDQDSAPSD-RDDSAGSG 707
Query: 369 QHAAHHGEVPLGLQSEQ 319
H+A HG +P ++ Q
Sbjct: 708 LHSARHGVLPAQTRNRQ 724
>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
Length = 486
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 510 PHHQLGVVDAVNGEYESAQGRVHERYDLTFHEYRHDTEYKEDDGGA 373
P H+ NG Y ++GR+H Y + +EY + D GA
Sbjct: 352 PDHRFSATSQYNGNYPPSRGRLHSIYSWE-PRAKSSSEYLQVDLGA 396
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -1
Query: 310 PGTRPPLCQLPSAPHPLRRPCANAEQEALRCREDGQEYEVRRSFASHVGTARHRDETDYQ 131
P + PL LPS P+ L+RP + + E+ + E+ + + A+ + DY+
Sbjct: 269 PKAKKPLLTLPSTPNVLKRPKMKPKTHVEKTHEEQELEEINK--MREMFRAKMKQHDDYR 326
>SB_34635| Best HMM Match : PE (HMM E-Value=0.82)
Length = 436
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 474 GEYESAQGRVHERYDLTFHEYRHDTEYK 391
GE E Q H+R +FHE H+ +Y+
Sbjct: 291 GEIERNQREYHQRNIKSFHEKAHEDDYR 318
>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
Length = 1265
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 483 RLRHPADDGGKHKYSISARGVHLRGPQPLLGHHQHIPGH 599
R+ HP GG+ YS G+ GPQ +LG IPG+
Sbjct: 155 RIPHP-QQGGQPMYSSPPAGM---GPQLVLGSQPFIPGN 189
>SB_52550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 310 PGTRPPLCQLPSAPHPLRRPCANAEQEALRC 218
P + PP C+ H R AN Q ALRC
Sbjct: 151 PPSPPPECRSYKMLHGADRAMANTAQNALRC 181
>SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)
Length = 551
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 247 RKVYEADAVLMAVGITAAVCLGLTLFALQTK-WDFTMMGGVLLCATIVLLVFGIVAIFVK 423
+ +Y L I AV L + L A+ W + GG ++ ++ + + IFV
Sbjct: 438 KTIYSKLEFLANTYIAVAVSLFILLAAIAHMIWKINIHGGEVMRISMCASIIYMEIIFVV 497
Query: 424 GKVITLVYASLGALIFSIY 480
G + G L FSIY
Sbjct: 498 GANVKAEQTLCGFLSFSIY 516
>SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09)
Length = 820
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 265 DAVLMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVL 390
D +L+ + + LF + D MM GVLLC T V+
Sbjct: 379 DVLLVVTDVVGDTMIDDVLFGVTDVVDDAMMDGVLLCVTNVV 420
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,706,439
Number of Sequences: 59808
Number of extensions: 436561
Number of successful extensions: 1431
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -