Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021873X
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    29   0.36 
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    28   0.62 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   3.3  

>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 162 RRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYN 263
           RR+R+  H W KK     AEF +  TNY    YN
Sbjct: 586 RRKRLDVHPWVKKIDTLAAEFPAH-TNYLYTSYN 618


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 147 RHRLPRRQRVTRHHWFKKTAPFEAEFKSF----TTNYKM 251
           RH +   +   R+HW   T   +A+ KSF    TT+Y++
Sbjct: 260 RHHIKVLRDTLRNHWVSTTRDLKADIKSFLSMATTDYQL 298


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 81  GERPLRSLAERARRHARDVTRARHRLP 161
           GE+ +R+LA   R H +   RA +R P
Sbjct: 7   GEKYIRNLASYIRSHEKRFARAPYRAP 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,225,027
Number of Sequences: 5004
Number of extensions: 20921
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)