Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021873X
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0309 - 17342900-17342904,17343860-17343887,17344003-173441...    28   3.2  
03_05_0439 + 24319464-24320102                                         27   4.2  
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747...    27   5.6  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    27   7.3  
07_03_1026 - 23369298-23370326                                         27   7.3  
03_04_0071 + 17048222-17048227,17048348-17048601,17048679-17048940     27   7.3  
06_01_0874 - 6702059-6702733,6703146-6703521,6703677-6703770,670...    26   9.7  
04_04_0544 + 26127060-26127331,26128279-26128373,26129436-261295...    26   9.7  
02_05_0350 - 28179063-28179584,28179674-28180041,28180179-281802...    26   9.7  

>12_02_0309 -
           17342900-17342904,17343860-17343887,17344003-17344122,
           17344252-17344413,17344655-17344865,17344980-17345016,
           17345965-17346016
          Length = 204

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 395 VLYTMLKCIVTVLISTGKIPCVVLTLYIVTY 303
           + Y ++K    +LI+     CV+ T+YIV Y
Sbjct: 61  IFYALIKSNEALLITINAAGCVIETIYIVMY 91


>03_05_0439 + 24319464-24320102
          Length = 212

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 70  LAAPASGRSVPWPSALGA 123
           L APA+GR VPW +A  A
Sbjct: 101 LPAPAAGRMVPWAAATAA 118


>11_04_0426 -
           17573681-17574010,17574163-17574282,17574382-17574754,
           17575051-17575087,17575821-17575872
          Length = 303

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 395 VLYTMLKCIVTVLISTGKIPCVVLTLYIVTY 303
           + Y +LK    +LI+     CV+ T+YI  Y
Sbjct: 61  IYYALLKSDECLLITINSAGCVIETIYIAVY 91


>11_02_0051 +
           7776312-7780228,7780627-7780695,7781920-7781979,
           7782225-7782324,7782720-7782801,7782928-7782940,
           7783621-7783681
          Length = 1433

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 129 RDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKM 251
           R V +A  R PRR  + R  W  K A ++AE       YK+
Sbjct: 49  RFVIKAAERSPRRMELERWLWKLKAAFYDAEDLLDMHEYKL 89


>07_03_1026 - 23369298-23370326
          Length = 342

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 75  SAGERPLRSLAERARRH-ARDVTRARHRLPR 164
           SA E  LR   ERAR H  RD+ R R    R
Sbjct: 288 SAAENSLREAIERARPHMRRDIARQREAARR 318


>03_04_0071 + 17048222-17048227,17048348-17048601,17048679-17048940
          Length = 173

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 48  NLKVTSHISSAGERPLRSLAERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEA 218
           N+K T + S +   P+R+   R RR    + R+  RL RR R       ++T P EA
Sbjct: 58  NIKNTENTSFSSSTPIRTRLHRHRR--LPLPRSSSRLSRR-RSPEEERRRRTVPTEA 111


>06_01_0874 -
           6702059-6702733,6703146-6703521,6703677-6703770,
           6705455-6705833
          Length = 507

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 338 PCVVLTLYIVTYRPSALLKSIFKE 267
           P VV+ L +VTY  SALL   +++
Sbjct: 80  PAVVVALSVVTYYSSALLADCYRD 103


>04_04_0544 +
           26127060-26127331,26128279-26128373,26129436-26129545,
           26129661-26129733,26130310-26130563
          Length = 267

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 19/66 (28%), Positives = 25/66 (37%)
 Frame = +1

Query: 103 WPSALGATRVTSHARVTASHGANV*RVITGLRRPPRSRQNSKVSQQIIRCSFIIYSLKID 282
           W   L       HAR+  S         T    P  +RQ+  +  Q + CSFI +S    
Sbjct: 57  WLQYLSKEEAAVHARLRRSPAV---ASATSSSSPSSARQSFCLVSQEVHCSFITHSSVKI 113

Query: 283 FSKALG 300
           F   LG
Sbjct: 114 FKHGLG 119


>02_05_0350 -
           28179063-28179584,28179674-28180041,28180179-28180270,
           28180366-28180412
          Length = 342

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 69  ISSAGERPLRSLAERARRHARDVTRARHRLPRRQ 170
           I   GE+  R++A+R RRH R +  A  R   R+
Sbjct: 166 IKEQGEQLRRAMADRVRRHNRALLVAAERSAARR 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,507,267
Number of Sequences: 37544
Number of extensions: 124803
Number of successful extensions: 405
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)