Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021873X
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43) 31 0.46
SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15) 31 0.46
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_37314| Best HMM Match : Mlp (HMM E-Value=2) 29 1.4
SB_54537| Best HMM Match : Mlp (HMM E-Value=2.4) 29 1.4
SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5) 29 1.9
SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08) 28 2.5
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 28 3.3
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84) 28 3.3
SB_16299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_40928| Best HMM Match : MtrG (HMM E-Value=6) 27 5.7
SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_15964| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15) 27 5.7
SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042) 27 5.7
SB_44548| Best HMM Match : MtrG (HMM E-Value=6) 27 5.7
SB_41617| Best HMM Match : RVT_1 (HMM E-Value=0) 27 5.7
SB_25567| Best HMM Match : RVT_1 (HMM E-Value=0) 27 5.7
SB_19368| Best HMM Match : DEAD (HMM E-Value=4) 27 5.7
SB_10181| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_8271| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_7490| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_6031| Best HMM Match : RVT_1 (HMM E-Value=3.4) 27 5.7
SB_17625| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.8) 27 7.6
SB_36393| Best HMM Match : IF2_N (HMM E-Value=5.1) 26 10.0
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87) 26 10.0
SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27) 26 10.0
>SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43)
Length = 1074
Score = 30.7 bits (66), Expect = 0.46
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R +D T RH L R R + WF+K A EAE S T N + F L
Sbjct: 429 EEIRNLLQDKTLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 480
>SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
Length = 683
Score = 30.7 bits (66), Expect = 0.46
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R +D T RH L R R + WF+K A EAE S T N + F L
Sbjct: 369 EEIRNLLQDKTLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 420
>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 384 YVKMYCDSFDLNRKNPMRCINTVYSYLSTECFT-EVDF*GINYKRTSYNLL 235
YV YC + + P++C N Y +L +CF + DF + Y+ L
Sbjct: 94 YVSFYCFNMKYDFL-PLKCFNMKYDFLPLKCFNMKYDFLPLKCFNMKYDFL 143
>SB_37314| Best HMM Match : Mlp (HMM E-Value=2)
Length = 360
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R +D + RH L R R + WF+K A EAE S T N + F L
Sbjct: 210 EEIRNLLQDKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 261
>SB_54537| Best HMM Match : Mlp (HMM E-Value=2.4)
Length = 387
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R +D + RH L R R + WF+K A EAE S T N + F L
Sbjct: 155 EEIRNLLQDKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 206
>SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5)
Length = 399
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 212 ERGGLLKPVMTRHTLAPWEAVTRACDVTRVAPSALGQGTER 90
ER L K V RH + WE +T + TR + + Q T++
Sbjct: 174 ERHALFKDVKARHIESVWETITLLGNKTRSSLDQILQSTDK 214
>SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = -2
Query: 395 VLYTMLKCIVTVLISTGKIPCV-----VLTLYIVTYRPSALLKSIFKE*IIN 255
V+ MLKC+ LI+ + C+ +L L I Y +LK FK +I+
Sbjct: 417 VIMAMLKCLTYTLIAVCQFMCIMAIVELLFLKIEVYSGYTMLKHFFKRSVIS 468
>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
Length = 1057
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 61 HHILAAPASGRSVPWPSALGATRVTSHARVTASHGANV 174
H + + RS+ +PS+LG+ TS R SHG ++
Sbjct: 496 HSSSGSTKARRSLDFPSSLGSLLETSRPRKPTSHGRHI 533
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 79 PASGRSVPWP-SALGATRVTSHARVTASH 162
PAS + P P SA+GA ++HA+ TA H
Sbjct: 1824 PASSAAKPKPTSAVGAHPKSAHAKTTADH 1852
>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
Length = 944
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 79 PASGRSVPWP-SALGATRVTSHARVTASH 162
PAS + P P SA+GA ++HA+ TA H
Sbjct: 682 PASSAAKPKPTSAVGAHPKSAHAKTTADH 710
>SB_16299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 27.5 bits (58), Expect = 4.3
Identities = 25/93 (26%), Positives = 38/93 (40%)
Frame = +3
Query: 45 VNLKVTSHISSAGERPLRSLAERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEF 224
V +K SH S R ER +RH + ++PR+ RV R +K F
Sbjct: 90 VEMKGNSHFSEFSHSGKR---ER-KRHVLQTWKTVRKMPRKTRVFRSDNSRKMPRSCCVF 145
Query: 225 KSFTTNYKMFVYNLFLKNRLQ*STRSISNYIQC 323
F+ +Y LFL ++ +S + QC
Sbjct: 146 CEFSPHYPNRKRGLFLPCKVHAPAHRVSGW-QC 177
>SB_40928| Best HMM Match : MtrG (HMM E-Value=6)
Length = 272
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R ++ + RH L R R + WF+K A EAE S T N + F L
Sbjct: 18 EEIRNLLQNKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 69
>SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R +D + RH L R R + WF+K A EAE S T + + F L
Sbjct: 284 EEIRNLLQDKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKDPREFYATL 335
>SB_15964| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
Length = 602
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R +D + RH L R R + WF+K A EAE S T + + F L
Sbjct: 369 EEIRNLLQDKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKDPREFYATL 420
>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
Length = 815
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 156 LPRRQRVTRHHWFKKTAPFEAEFKSFTTNYK 248
LPR HWF K F+ + +FTT Y+
Sbjct: 584 LPRNYDHCSRHWFNKANAFKGQL-TFTTPYR 613
>SB_44548| Best HMM Match : MtrG (HMM E-Value=6)
Length = 272
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R ++ + RH L R R + WF+K A EAE S T N + F L
Sbjct: 18 EEIRNLLQNKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 69
>SB_41617| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 675
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R ++ + RH L R R + WF+K A EAE S T N + F L
Sbjct: 18 EEIRNLLQNKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 69
>SB_25567| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 636
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R ++ + RH L R R + WF+K A EAE S T N + F L
Sbjct: 18 EEIRNLLQNKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 69
>SB_19368| Best HMM Match : DEAD (HMM E-Value=4)
Length = 217
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -2
Query: 386 TMLKCIVTVLISTGKIPCVVLTLYIVTYRPSALLK 282
T + C+V VLI++GK V+LT Y T + LLK
Sbjct: 139 TTIACLVKVLIASGK--SVLLTSYTHTAVDNILLK 171
>SB_10181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R ++ + RH L R R + WF+K A EAE S T N + F L
Sbjct: 18 EEIRNLLQNKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 69
>SB_8271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R ++ + RH L R R + WF+K A EAE S T N + F L
Sbjct: 18 EEIRNLLQNKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 69
>SB_7490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R ++ + RH L R R + WF+K A EAE S T N + F L
Sbjct: 18 EEIRNLLQNKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 69
>SB_6031| Best HMM Match : RVT_1 (HMM E-Value=3.4)
Length = 378
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R ++ + RH L R R + WF+K A EAE S T N + F L
Sbjct: 18 EEIRNLLQNKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 69
>SB_17625| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.8)
Length = 217
Score = 26.6 bits (56), Expect = 7.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 108 ERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
E R ++ + RH L R R + WF+K A EAE S T N + F L
Sbjct: 18 EEFRNLLQNKSLDRHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 69
>SB_36393| Best HMM Match : IF2_N (HMM E-Value=5.1)
Length = 275
Score = 26.2 bits (55), Expect = 10.0
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 147 RHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYKMFVYNL 266
RH L R R + WF+K A EAE S T N + F L
Sbjct: 6 RHSLRTRIRQIKDAWFQKKAE-EAEHFSQTKNPREFYATL 44
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 81 GERPLRSLAERARRHARDVTRARHRLPRRQRVTR 182
G R R + H R +R+R R PRR+R +R
Sbjct: 205 GYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSR 238
>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
Length = 371
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 398 VVLYTMLKCIVTVLISTGKIPCVVLTLYIVTYRPSALL 285
+V+Y + + +I G P +LT+ + + +PS +L
Sbjct: 206 IVVYGLTPSYILTIIVYGLTPSYILTIVVYSLKPSYIL 243
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 398 VVLYTMLKCIVTVLISTGKIPCVVLTLYIVTYRPSALL 285
+V+Y + + +I G P +LT+ + + +PS +L
Sbjct: 258 IVVYGLTPSYILTIIVYGLTPSYILTIVVYSLKPSYIL 295
>SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)
Length = 335
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 150 HRLPRRQRVTRHHWFKKTAP 209
HR+P+R RVT+ H K P
Sbjct: 89 HRIPKRCRVTQDHRIPKRCP 108
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 153 RLPRRQRVTRHHWFKKTAPF 212
R+P+R VT+HH K PF
Sbjct: 126 RIPKRCPVTQHHRIPKRCPF 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,104,124
Number of Sequences: 59808
Number of extensions: 155038
Number of successful extensions: 563
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -