Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021873X
(402 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X76302-1|CAA53949.1| 163|Homo sapiens nucleic acid binding prot... 29 4.4
U31762-1|AAC51171.1| 285|Homo sapiens homeobox protein protein. 29 4.4
BC017890-1|AAH17890.1| 155|Homo sapiens putative nucleic acid b... 29 4.4
AC019206-3|AAY14866.1| 155|Homo sapiens unknown protein. 29 4.4
AF068227-1|AAC27614.1| 407|Homo sapiens putative transmembrane ... 29 5.8
U37146-1|AAC50236.1| 1495|Homo sapiens silencing mediator of ret... 29 7.7
S83390-1|AAB50847.1| 769|Homo sapiens T3 receptor-associating c... 29 7.7
BC004326-1|AAH04326.1| 606|Homo sapiens Unknown (protein for IM... 29 7.7
AY965853-1|AAX77219.1| 2461|Homo sapiens SMRTE-tau protein. 29 7.7
AF125672-1|AAD22973.1| 2507|Homo sapiens silencing mediator of r... 29 7.7
AF113003-1|AAD20946.1| 2517|Homo sapiens silencing mediator of r... 29 7.7
>X76302-1|CAA53949.1| 163|Homo sapiens nucleic acid binding protein
protein.
Length = 163
Score = 29.5 bits (63), Expect = 4.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 72 SSAGERPLRSLAERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFK 227
S++ ER R ER+R RD R+R R P R+R + T+P + K
Sbjct: 26 STSRERERRR-RERSRSRERDRRRSRSRSPHRRRSRSPRRHRSTSPSPSRLK 76
>U31762-1|AAC51171.1| 285|Homo sapiens homeobox protein protein.
Length = 285
Score = 29.5 bits (63), Expect = 4.4
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 70 LAAPASGRSVPW--PSALGATRVTSHARVTASHGANV*RVITG 192
L P +G +VPW PSA RVT RV A GA + V G
Sbjct: 148 LRPPTAGAAVPWLWPSARFLPRVTGPIRVGAPLGAELRLVSPG 190
>BC017890-1|AAH17890.1| 155|Homo sapiens putative nucleic acid
binding protein RY-1 protein.
Length = 155
Score = 29.5 bits (63), Expect = 4.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 72 SSAGERPLRSLAERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFK 227
S++ ER R ER+R RD R+R R P R+R + T+P + K
Sbjct: 18 STSRERERRR-RERSRSRERDRRRSRSRSPHRRRSRSPRRHRSTSPSPSRLK 68
>AC019206-3|AAY14866.1| 155|Homo sapiens unknown protein.
Length = 155
Score = 29.5 bits (63), Expect = 4.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 72 SSAGERPLRSLAERARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFK 227
S++ ER R ER+R RD R+R R P R+R + T+P + K
Sbjct: 18 STSRERERRR-RERSRSRERDRRRSRSRSPHRRRSRSPRRHRSTSPSPSRLK 68
>AF068227-1|AAC27614.1| 407|Homo sapiens putative transmembrane
protein protein.
Length = 407
Score = 29.1 bits (62), Expect = 5.8
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 192 FKKTAPFEAEFKSFTTNY-KMFVYN 263
F K A F AEFK+ TNY ++F+Y+
Sbjct: 288 FNKLAEFGAEFKNIETNYTRIFLYS 312
>U37146-1|AAC50236.1| 1495|Homo sapiens silencing mediator of retinoid
and thyroid hormone action protein.
Length = 1495
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 72 SSAGERPLRSLAERARRHARDVTRARHRLPR-RQRVTRHHWFKKTAPFEAEFKSF 233
S PL A + H R VT A+H Q TRHH + +AP A SF
Sbjct: 1090 SQPSSSPLLQTAPGVKGHQRVVTLAQHISEVITQDYTRHHPQQLSAPLPAPLYSF 1144
>S83390-1|AAB50847.1| 769|Homo sapiens T3 receptor-associating
cofactor-1 protein.
Length = 769
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 72 SSAGERPLRSLAERARRHARDVTRARHRLPR-RQRVTRHHWFKKTAPFEAEFKSF 233
S PL A + H R VT A+H Q TRHH + +AP A SF
Sbjct: 410 SQPSSSPLLQTAPGVKGHQRVVTLAQHISEVITQDYTRHHPQQLSAPLPAPLYSF 464
>BC004326-1|AAH04326.1| 606|Homo sapiens Unknown (protein for
IMAGE:3629785) protein.
Length = 606
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 72 SSAGERPLRSLAERARRHARDVTRARHRLPR-RQRVTRHHWFKKTAPFEAEFKSF 233
S PL A + H R VT A+H Q TRHH + +AP A SF
Sbjct: 201 SQPSSSPLLQTAPGVKGHQRVVTLAQHISEVITQDYTRHHPQQLSAPLPAPLYSF 255
>AY965853-1|AAX77219.1| 2461|Homo sapiens SMRTE-tau protein.
Length = 2461
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 72 SSAGERPLRSLAERARRHARDVTRARHRLPR-RQRVTRHHWFKKTAPFEAEFKSF 233
S PL A + H R VT A+H Q TRHH + +AP A SF
Sbjct: 2102 SQPSSSPLLQTAPGVKGHQRVVTLAQHISEVITQDYTRHHPQQLSAPLPAPLYSF 2156
>AF125672-1|AAD22973.1| 2507|Homo sapiens silencing mediator of
retinoic acid and thyroid hormone receptor extended isofo
protein.
Length = 2507
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 72 SSAGERPLRSLAERARRHARDVTRARHRLPR-RQRVTRHHWFKKTAPFEAEFKSF 233
S PL A + H R VT A+H Q TRHH + +AP A SF
Sbjct: 2102 SQPSSSPLLQTAPGVKGHQRVVTLAQHISEVITQDYTRHHPQQLSAPLPAPLYSF 2156
>AF113003-1|AAD20946.1| 2517|Homo sapiens silencing mediator of
retinoic acid and thyroid hormone receptor alpha protein.
Length = 2517
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 72 SSAGERPLRSLAERARRHARDVTRARHRLPR-RQRVTRHHWFKKTAPFEAEFKSF 233
S PL A + H R VT A+H Q TRHH + +AP A SF
Sbjct: 2112 SQPSSSPLLQTAPGVKGHQRVVTLAQHISEVITQDYTRHHPQQLSAPLPAPLYSF 2166
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,776,656
Number of Sequences: 237096
Number of extensions: 661398
Number of successful extensions: 1525
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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