Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021873X
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.24 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   0.99 

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 225 KSFTTNYKMFVYNLFLKNRLQ*STRSISNYIQC*YNAW 338
           KS  T   +FV NL + N L     S    I C Y  W
Sbjct: 81  KSLRTPSNLFVINLAISNFLMMFCMSPPMVINCYYETW 118


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 225 KSFTTNYKMFVYNLFLKNRLQ*STRSISNYIQC*YNAW 338
           KS  T   +FV NL + + L     S    I C Y  W
Sbjct: 47  KSLRTPSNLFVINLAISDFLMMFCMSPPMVINCYYETW 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,760
Number of Sequences: 438
Number of extensions: 1631
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)