Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021873X
(402 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26970.1 68418.m03218 hypothetical protein 27 3.5
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 27 4.7
At4g35300.2 68417.m05018 transporter-related low similarity to h... 27 6.2
At4g35300.1 68417.m05017 transporter-related low similarity to h... 27 6.2
At2g37070.1 68415.m04549 expressed protein 27 6.2
At4g33050.3 68417.m04705 calmodulin-binding family protein conta... 26 8.2
At4g33050.2 68417.m04703 calmodulin-binding family protein conta... 26 8.2
At4g33050.1 68417.m04704 calmodulin-binding family protein conta... 26 8.2
At4g01840.1 68417.m00241 outward rectifying potassium channel, p... 26 8.2
>At5g26970.1 68418.m03218 hypothetical protein
Length = 108
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 51 LKVTSHISSAGERPLRSLAERAR 119
+ + SH+SSAGE+P+ L E +
Sbjct: 9 VSIQSHVSSAGEKPIHVLDENPK 31
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 42 IVNLKVTSHISSAGERPLRSLAERARRHAR 131
I+N+ V H S +G RP L + + H +
Sbjct: 211 ILNVSVAMHFSMSGNRPYHKLCYKEQHHPK 240
>At4g35300.2 68417.m05018 transporter-related low similarity to
hexose transporter [Solanum tuberosum] GI:8347246;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 729
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 314 IVTYRPSALLKSIFKE*IINEHLIICCETFEF 219
IVTY LLKSI + + I+CC ++ F
Sbjct: 665 IVTYSLPVLLKSIGLAGVFGMYAIVCCISWVF 696
>At4g35300.1 68417.m05017 transporter-related low similarity to
hexose transporter [Solanum tuberosum] GI:8347246;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 739
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 314 IVTYRPSALLKSIFKE*IINEHLIICCETFEF 219
IVTY LLKSI + + I+CC ++ F
Sbjct: 675 IVTYSLPVLLKSIGLAGVFGMYAIVCCISWVF 706
>At2g37070.1 68415.m04549 expressed protein
Length = 420
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 91 RSVPWPSALGATRVTSHARVTASHGANV*RVITGLRRPPRSRQNSK 228
R P + G + T H + H ++ R TGL RP +K
Sbjct: 79 RKRPGIRSQGLAKATKHPVASEEHNTSISRPSTGLNRPSSGLSKTK 124
>At4g33050.3 68417.m04705 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 295
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 111 RARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYK 248
RAR+ A V + + + Q++ HW + +P F T+Y+
Sbjct: 168 RARKRAAKVGKGLSKDEKAQKLALQHWLEAVSPHNLNI--FVTSYQ 211
>At4g33050.2 68417.m04703 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 526
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 111 RARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYK 248
RAR+ A V + + + Q++ HW + +P F T+Y+
Sbjct: 168 RARKRAAKVGKGLSKDEKAQKLALQHWLEAVSPHNLNI--FVTSYQ 211
>At4g33050.1 68417.m04704 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 374
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 111 RARRHARDVTRARHRLPRRQRVTRHHWFKKTAPFEAEFKSFTTNYK 248
RAR+ A V + + + Q++ HW + +P F T+Y+
Sbjct: 168 RARKRAAKVGKGLSKDEKAQKLALQHWLEAVSPHNLNI--FVTSYQ 211
>At4g01840.1 68417.m00241 outward rectifying potassium channel,
putative (KCO5) identical to KCO5 protein [Arabidopsis
thaliana] gi|6522947|emb|CAB62162; similar to kco1
[Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
family, PMID:11500563
Length = 408
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 181 VITGLR-RPPRSRQNSKVSQQIIRCSFIIYSLKIDFSKALGR*VTIYSVNTTH 336
+I LR +PP +++ S VS+ IIR + + + + LG V+IYS N H
Sbjct: 95 IIKDLRTKPPETKKPSPVSKSIIRQAIFLLIVYL----TLG--VSIYSFNRDH 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,118,504
Number of Sequences: 28952
Number of extensions: 101433
Number of successful extensions: 308
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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