Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021872
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 60 2e-10
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 48 1e-06
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 47 3e-06
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 38 0.001
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 38 0.001
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 1.7
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 1.7
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 9.1
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 9.1
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 60.5 bits (140), Expect = 2e-10
Identities = 37/107 (34%), Positives = 59/107 (55%)
Frame = +1
Query: 295 QTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 474
Q E T MR ++ EW++E+ + E LA++ +DRFLS + S+ QL G LL
Sbjct: 161 QKELTWKMREILNEWLVEIHSNFCLMPETLYLAVNIIDRFLSRRSCSLSKFQLTGITALL 220
Query: 475 LASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVA 615
+ASK E C S + V+ T + T+ D+C E +L+ L +D++
Sbjct: 221 IASKYEEV-MCPSIQN-FVYMTDGAFTVEDVCVAERYMLNVLNFDLS 265
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 48.0 bits (109), Expect = 1e-06
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Frame = +1
Query: 259 RYAVTANYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGK 438
+ A NY +VQ E R ++ +W+++V E LA++ +DRFLSI V
Sbjct: 177 KLAPPPNYM-SVQQEIDWVTRHMLVDWIVQVQIHFRLLPETLFLAVNLIDRFLSIKVVSL 235
Query: 439 SQVQLLGTACLLLASKLREPRSCXSPPDLLVF-YTANSI-TLTDLCSWELLVLSKLKWDV 612
+VQL+G + LL+A K E PP + F + I T+ ++ E +L L +D+
Sbjct: 236 QKVQLVGLSALLIACKYEE----IHPPSIYNFAHVVQGIFTVDEIIRAERYMLMLLDFDI 291
Query: 613 A 615
+
Sbjct: 292 S 292
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 46.8 bits (106), Expect = 3e-06
Identities = 31/107 (28%), Positives = 54/107 (50%)
Frame = +1
Query: 295 QTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 474
Q E MR ++ +W++EV E LA++ +DRFLS+ +++QL+G A L
Sbjct: 228 QKELAWKMRGILTDWLIEVHSRFRLLPETLFLAVNIIDRFLSLRVCSLNKLQLVGIAALF 287
Query: 475 LASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVA 615
+ASK E C S + V+ ++ E +L L++++A
Sbjct: 288 IASKYEEV-MCPSVQN-FVYMADGGYDEEEILQAERYILRVLEFNLA 332
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/99 (30%), Positives = 46/99 (46%)
Frame = +1
Query: 316 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 495
MR V W++ V E L+I+ LDRFLS+ V S+++L G L +A K E
Sbjct: 174 MRASVINWIVGVHTCINLLPESLFLSINVLDRFLSLQNVPASKMKLCGATALFIACKYEE 233
Query: 496 PRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDV 612
+ DL + I D+C E +L L++ +
Sbjct: 234 IHP-PTVKDLEIVLEGEWIG-EDICGMEKYMLMVLQYQL 270
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = +1
Query: 316 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 495
MR + +++E+ + PL+IS +D ++S V +QL+ CL +ASK E
Sbjct: 128 MRPALVNFIVEIHNGFDLSIDTLPLSISLMDSYVSRRVVYCKHIQLVACVCLWIASKFHE 187
Query: 496 PRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVA 615
L N E +L L WD++
Sbjct: 188 TEDRVPLLQELKLACKNIYAEDLFIRMERHILDTLDWDIS 227
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 187 QPRCALATAGAEPFRAQQLHVYPNGHVRVAKDMICSARS 71
+ RCAL TA +PFR++ GH ++ I A S
Sbjct: 219 ESRCALHTAAKDPFRSKNSLRCNRGHSPLSSQQILPAIS 257
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 19 NTTCNTPALAPDRSAVEHSAQNKSYPSRRVRDRSDKHGAVVRGTA 153
N+ +T + D +S QN ++ + +D H VVRG+A
Sbjct: 319 NSNYSTTRVDNDPHVASYSPQNSNFDHQAAATTNDAHQNVVRGSA 363
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 19 NTTCNTPALAPDRSAVEHSAQNKSYPSRRVRDRSDKHGAVVR 144
N + T +AP ++ + + +YP+RR+ ++ K A+ R
Sbjct: 149 NASSYTTPMAPFTASFSNKVSHSAYPTRRLPSQAKKTSAIER 190
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -1
Query: 470 RQAVPKSCT*LFPTAQ----MLKNRSRNDIASGKTSSWQ 366
+Q + KS +FPT L N+ N +GK +SW+
Sbjct: 507 KQEIAKSIGTIFPTKDNYVYYLPNKEANTYNAGKEASWE 545
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 479 LPNSVSQDRVXPRLTYLSSTPQTASP 556
LP+ +SQ V P+L++ SS P A P
Sbjct: 276 LPSHLSQSNVPPQLSH-SSVPSPAPP 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,605
Number of Sequences: 5004
Number of extensions: 43382
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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