Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021872
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 6e-12
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0) 56 2e-08
SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20) 48 5e-06
SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05) 35 0.048
SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081) 28 7.2
SB_32434| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_18552| Best HMM Match : DLH (HMM E-Value=0.037) 27 9.6
SB_28218| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 123 bits (296), Expect = 1e-28
Identities = 58/105 (55%), Positives = 75/105 (71%)
Frame = +1
Query: 316 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 495
MR+LVA WMLEVCE+ C+EEVF L++++LDR LS+ V K Q+QLLG C+ +ASK++E
Sbjct: 1 MRKLVATWMLEVCEEERCEEEVFALSMNYLDRILSLLPVKKFQLQLLGAVCMFIASKMKE 60
Query: 496 PRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAH 630
+ + L YT NSIT +L WELLVL KLKWDV+ VT H
Sbjct: 61 TSPLTA--EKLCIYTDNSITTEELLDWELLVLGKLKWDVSAVTPH 103
>SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 68.1 bits (159), Expect = 6e-12
Identities = 36/102 (35%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Frame = +1
Query: 316 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 495
MR ++ +W++EV E+ + L ++++DRFLS +V + ++QL+GTAC+LLASK E
Sbjct: 223 MRAILVDWLVEVAEEYKLLPQTLYLTVNYIDRFLSAMSVLRGKLQLVGTACMLLASKFEE 282
Query: 496 PRSCXSPPDL--LVFYTANSITLTDLCSWELLVLSKLKWDVA 615
PP++ V+ T ++ T + E LVL L +D++
Sbjct: 283 ----IYPPEVSEFVYITDDTYTAKQVLKMEQLVLKVLTFDLS 320
>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
Length = 561
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Frame = +1
Query: 256 ERYAVTANYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVG 435
E Y+V+ Y Q N MR ++ +W+++V +E + +S +DRFL++ V
Sbjct: 158 EHYSVSPTYMNNQQEVNEK-MRAILLDWLVQVHLKFRLLQETLYITMSIIDRFLAVHQVS 216
Query: 436 KSQVQLLGTACLLLASKLREPRSCXSPPDL--LVFYTANSITLTDLCSWELLVLSKLKWD 609
K ++QL+G +LLASK E P++ V+ T ++ T + E L+ KL +
Sbjct: 217 KRELQLVGVGAMLLASKYEE----MFAPEIGDFVYITDHAYTKKQIRQMESLIFRKLDFS 272
Query: 610 V 612
+
Sbjct: 273 L 273
>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
Length = 279
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/99 (28%), Positives = 47/99 (47%)
Frame = +1
Query: 316 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 495
+RR + +W+ + E G V LAI ++D F+ + +SQ+ LL LLLA+K E
Sbjct: 60 IRRYLVDWLAVIGEKLGSSHGVVHLAIYYMDFFMDKFIIQESQLHLLALTALLLAAKFDE 119
Query: 496 PRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDV 612
+ L + N+ + ELL+L W++
Sbjct: 120 NENQIPDISTLNKFVNNTYQHAEYHQMELLLLEFFNWNI 158
>SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05)
Length = 223
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 388 LAISFLDRFLSICAVGKSQVQLLGTACLLLASKLREPRS 504
L ++ +DR++S+ V + QLLG ACLL+A K + S
Sbjct: 82 LIVALVDRYMSLRTVPVAHFQLLGMACLLVACKYEDRAS 120
>SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 211 RVGCSSLRQPRCALATAGAEPFRAQQLHVYPNGHVRVA 98
+ G +S+ P CA ATA ++ ++ H P GHV ++
Sbjct: 243 KAGKNSVILPNCATATAASKAPKSTTAHA-PEGHVMIS 279
>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
Length = 1617
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 82 NKSYPSRRVRDRSDKHGAVVRGTAQPRQWRGRTAAAA 192
+K+YP R+ R SD + GT R RG+ A +A
Sbjct: 882 HKTYPRRQQRSGSDGNAHHTEGTDSRRVLRGKGAGSA 918
>SB_32434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -1
Query: 458 PKSCT*LFPTAQMLKNRSRNDIASGKTSSWQPRSSHTSSIHSATRRRM*GVFSVC 294
PK+ L P +LK + + G+T SW+ + + + S R+ GV C
Sbjct: 16 PKTGIRLCPEEGLLKTKIWRMLLKGETGSWEQGAGNRERVISGYRQIQDGVLLCC 70
>SB_18552| Best HMM Match : DLH (HMM E-Value=0.037)
Length = 388
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 22 TTCNTPALAPDRSAVEHSAQNKSYP-SRRVRDRS 120
TTC+T L+P R V H + + YP SR R +S
Sbjct: 227 TTCSTTILSPSRE-VSHGSIHVRYPGSRSTRSQS 259
>SB_28218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 109 RDRSDKHGAVVRGTAQPRQWRGR 177
RDRS+K G VR Q R+ RGR
Sbjct: 71 RDRSEKVGVFVRDLKQRRRQRGR 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,917,777
Number of Sequences: 59808
Number of extensions: 386770
Number of successful extensions: 1229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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