Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021872
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 55 GRERAPECCT*CCDN 11
          GR     CC  CCDN
Sbjct: 4  GRHVVMSCCCWCCDN 18


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 315 VRCVLGLHSAEVVSG 271
           V+  +G+HS EVV+G
Sbjct: 508 VKITIGIHSGEVVTG 522


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 315 VRCVLGLHSAEVVSG 271
           V+  +G+HS EVV+G
Sbjct: 508 VKITIGIHSGEVVTG 522


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = +3

Query: 522 PTCLLHRKQHHPYRSLQLGVASAVEAEMGCSRGDS 626
           P C ++RK HH   S        +    G    DS
Sbjct: 403 PNCKINRKVHHTTSSSSAAGGEGLADRRGSESSDS 437


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 390 GDIVPGSVLEHL 425
           GDI PGS++E++
Sbjct: 386 GDIKPGSIIENI 397


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 367 CQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLREPRSCXSPPDLLV 531
           C   +  L +  +DRF +I    K  V+      ++  S +    +C S P LL+
Sbjct: 125 CTASILNLCMISVDRFCAITKPLKYGVKRTPRRMIVYVSLVWLGAACISLPPLLI 179


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 127 HGAVVRGTAQPRQWRGRTAAAASCCT 204
           H  ++RG A PR      + A  C +
Sbjct: 728 HNYIMRGEASPRSPNASPSPAEQCAS 753


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 324 TAHVRCVLGLHSAEVVSGDGI 262
           TAH+   L L S EV   DG+
Sbjct: 113 TAHLLAQLFLKSTEVTPRDGL 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,295
Number of Sequences: 438
Number of extensions: 3152
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)