Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021872
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47230.1 68414.m05228 cyclin, putative similar to cyclin A-li... 75 5e-14
At1g47230.2 68414.m05229 cyclin, putative similar to cyclin A-li... 73 2e-13
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc... 72 3e-13
At5g43080.1 68418.m05259 cyclin, putative similar to A-type cycl... 71 6e-13
At1g47210.2 68414.m05226 cyclin family protein similar to A-type... 71 6e-13
At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyc... 68 6e-12
At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to c... 66 2e-11
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li... 65 3e-11
At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin [... 65 4e-11
At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyc... 65 4e-11
At1g47210.1 68414.m05225 cyclin family protein similar to A-type... 60 9e-10
At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2... 59 2e-09
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 59 3e-09
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 53 2e-07
At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2 [... 53 2e-07
At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-l... 52 3e-07
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 51 6e-07
At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1 pro... 50 2e-06
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-... 50 2e-06
At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [... 49 3e-06
At1g76310.1 68414.m08864 cyclin, putative similar to B-like cycl... 49 3e-06
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin... 48 4e-06
At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25... 48 5e-06
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc... 48 7e-06
At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42... 44 6e-05
At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to SP|... 43 1e-04
At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical... 42 4e-04
At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to SP|... 41 6e-04
At1g34460.1 68414.m04281 cyclin, putative strong similarity to c... 39 0.002
At4g03270.1 68417.m00446 cyclin family protein similar to CycD3;... 36 0.022
At3g50070.1 68416.m05474 cyclin family protein similar to cyclin... 36 0.022
At5g67260.1 68418.m08478 cyclin family protein similar to cyclin... 35 0.039
At5g19540.1 68418.m02327 expressed protein 29 3.4
At1g08320.1 68414.m00920 bZIP family transcription factor contai... 29 3.4
At1g11930.2 68414.m01379 alanine racemase family protein contain... 28 4.5
At3g18630.1 68416.m02367 uracil DNA glycosylase family protein c... 28 5.9
>At1g47230.1 68414.m05228 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 369
Score = 74.5 bits (175), Expect = 5e-14
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
+Y VQ++ TPHMR ++ +W++EV E+ + L IS++DRFLS+ + + ++QL+
Sbjct: 117 DYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQKLQLV 176
Query: 457 GTACLLLASKLREPRSCXSPPDL--LVFYTANSITLTDLCSWELLVLSKLKWDVAGVT 624
G + +L+ASK E PP + + T N+ T ++ S E +L L++++ T
Sbjct: 177 GVSAMLIASKYEE----IGPPKVEDFCYITDNTFTKQEVVSMEADILLALQFELGSPT 230
>At1g47230.2 68414.m05229 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 370
Score = 72.5 bits (170), Expect = 2e-13
Identities = 36/116 (31%), Positives = 67/116 (57%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
+Y VQ++ TPHMR ++ +W++EV E+ + L IS++DRFLS+ + + ++QL+
Sbjct: 117 DYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQKLQLV 176
Query: 457 GTACLLLASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVT 624
G + +L+AS+ E D + T N+ T ++ S E +L L++++ T
Sbjct: 177 GVSAMLIASRKYEEIGPPKVED-FCYITDNTFTKQEVVSMEADILLALQFELGSPT 231
>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
3a [Arabidopsis thaliana] GI:509425; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
for cyclin 3b protein GI:728520
Length = 436
Score = 72.1 bits (169), Expect = 3e-13
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Frame = +1
Query: 274 ANYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQL 453
ANY VQ + P MR+++ +W++EV +D + L ++ +DRFLS + + ++QL
Sbjct: 191 ANYMELVQRDIDPDMRKILIDWLVEVSDDYKLVPDTLYLTVNLIDRFLSNSYIERQRLQL 250
Query: 454 LGTACLLLASKLREPRSCXSPPDL--LVFYTANSITLTDLCSWELLVLS 594
LG +C+L+ASK E S P + F TAN+ T ++ S E+ +L+
Sbjct: 251 LGVSCMLIASKYEE----LSAPGVEEFCFITANTYTRPEVLSMEIQILN 295
>At5g43080.1 68418.m05259 cyclin, putative similar to A-type cyclins
from [Nicotiana tabacum] GI:1064931, [Catharanthus
roseus] GI:2190259; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 355
Score = 70.9 bits (166), Expect = 6e-13
Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
+Y +Q + T +MR ++ +W++EV E+ + LA+S++DRFLS+ V K ++QLL
Sbjct: 107 DYIEKIQKDVTSNMRGVLVDWLVEVAEEYKLLSDTLYLAVSYIDRFLSLKTVNKQRLQLL 166
Query: 457 GTACLLLASKLREPRSCXSPP--DLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAH 630
G +L+ASK E +PP D + T N+ T ++ E +L L++++ T++
Sbjct: 167 GVTSMLIASKYEE----ITPPNVDDFCYITDNTYTKQEIVKMEADILLALQFELGNPTSN 222
>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 372
Score = 70.9 bits (166), Expect = 6e-13
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
+Y VQ + TP MR ++ +W++EV E+ E L +S +DRFLS+ V K ++QL+
Sbjct: 124 DYIEKVQKDVTPSMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSLKTVNKQKLQLV 183
Query: 457 GTACLLLASKLREPRSCXSPP--DLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVT 624
G + +L+ASK E SPP D + T N+ + D+ E +L L++++ T
Sbjct: 184 GVSAMLIASKYEE----ISPPKVDDFCYITDNTFSKQDVVKMEADILLALQFELGRPT 237
>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 442
Score = 67.7 bits (158), Expect = 6e-12
Identities = 35/117 (29%), Positives = 63/117 (53%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
+Y Q+ MR ++ +W++EV E+ E LA++++DR+L+ A+ K +QLL
Sbjct: 198 DYMERTQSSINASMRSILIDWLVEVAEEYRLSPETLYLAVNYVDRYLTGNAINKQNLQLL 257
Query: 457 GTACLLLASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTA 627
G C+++A+K E C + + T N+ +L E VL+ LK+++ TA
Sbjct: 258 GVTCMMIAAKYEE--VCVPQVEDFCYITDNTYLRNELLEMESSVLNYLKFELTTPTA 312
>At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to
cyclin 3a [Arabidopsis thaliana] GI:509425; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 437
Score = 65.7 bits (153), Expect = 2e-11
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Frame = +1
Query: 271 TANYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQ 450
+ +Y VQ + P MR ++ +W++EV E+ + L ++ +DRF+S + K ++Q
Sbjct: 191 STSYMVQVQRDIDPTMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFMSHNYIEKQKLQ 250
Query: 451 LLGTACLLLASKLREPRSCXSPPDL--LVFYTANSITLTDLCSWELLVLSKL 600
LLG C+L+ASK E S P L F T N+ T ++ S E+ VL+ L
Sbjct: 251 LLGITCMLIASKYEE----ISAPRLEEFCFITDNTYTRLEVLSMEIKVLNSL 298
>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 327
Score = 65.3 bits (152), Expect = 3e-11
Identities = 35/118 (29%), Positives = 64/118 (54%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
+Y +Q + TP R ++ +W++EV E+ E L +S++DRFLS+ V + +QL+
Sbjct: 78 DYIEKIQEDITPSKRGVLVDWLVEVAEEFELVSETLYLTVSYIDRFLSLKMVNEHWLQLV 137
Query: 457 GTACLLLASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAH 630
G + + +ASK E R + + TAN+ T D+ E +L L++++ T +
Sbjct: 138 GVSAMFIASKYEEKR--RPKVEDFCYITANTYTKQDVLKMEEDILLALEFELGRPTTN 193
>At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin
[Arabidopsis thaliana] GI:1360646
Length = 445
Score = 64.9 bits (151), Expect = 4e-11
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Frame = +1
Query: 292 VQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACL 471
+QTE MR ++ +W+LEV E L ++ +DRFLS+ AV K ++QL+G + L
Sbjct: 205 IQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFLSVKAVPKRELQLVGISAL 264
Query: 472 LLASKLREPRSCXSPPDL--LVFYTANSITLTDLCSWELLVLSKLKW 606
L+ASK E PP + LV+ T N+ + + E +L L+W
Sbjct: 265 LIASKYEE----IWPPQVNDLVYVTDNAYSSRQILVMEKAILGNLEW 307
>At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397, cyclin A-like protein
[Nicotiana tabacum] GI:1064927; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 460
Score = 64.9 bits (151), Expect = 4e-11
Identities = 33/116 (28%), Positives = 63/116 (54%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
+Y VQ + MR ++ +W++EV E+ E L ++++DR+LS + + ++QLL
Sbjct: 214 DYMERVQKDVNSSMRGILVDWLIEVSEEYRLVPETLYLTVNYIDRYLSGNVISRQKLQLL 273
Query: 457 GTACLLLASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVT 624
G AC+++A+K E C + + T N+ ++ E VL+ LK+++ T
Sbjct: 274 GVACMMIAAKYEE--ICAPQVEEFCYITDNTYLKDEVLDMESDVLNYLKFEMTAPT 327
>At1g47210.1 68414.m05225 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 192
Score = 60.5 bits (140), Expect = 9e-10
Identities = 27/69 (39%), Positives = 44/69 (63%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
+Y VQ + TP MR ++ +W++EV E+ E L +S +DRFLS+ V K ++QL+
Sbjct: 124 DYIEKVQKDVTPSMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSLKTVNKQKLQLV 183
Query: 457 GTACLLLAS 483
G + +L+AS
Sbjct: 184 GVSAMLIAS 192
>At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2b
protein [Arabidopsis thaliana] GI:509423
Length = 429
Score = 59.3 bits (137), Expect = 2e-09
Identities = 37/120 (30%), Positives = 66/120 (55%)
Frame = +1
Query: 256 ERYAVTANYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVG 435
ER++ + Q + + MR ++ +W++EV + E L ++ +DRFLS AV
Sbjct: 184 ERFSCVPLDYMAQQFDISDKMRAILIDWLIEVHDKFELMNETLFLTVNLIDRFLSKQAVA 243
Query: 436 KSQVQLLGTACLLLASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVA 615
+ ++QL+G LLLA K E S DL+V + + T TD+ E ++LS L+++++
Sbjct: 244 RKKLQLVGLVALLLACKYEEV-SVPIVEDLVVI-SDKAYTRTDVLEMEKIMLSTLQFNMS 301
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +1
Query: 295 QTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 474
Q E MR ++ +W++EV E L ++ +DRFLS+ V + ++QL+G + LL
Sbjct: 183 QPEIDEKMRSILIDWLVEVHVKFDLSPETLYLTVNIIDRFLSLKTVPRRELQLVGVSALL 242
Query: 475 LASKLREPRSCXSPPDL--LVFYTANSITLTDLCSWELLVLSKLKW 606
+ASK E PP + LV+ T NS + E +L L+W
Sbjct: 243 IASKYEE----IWPPQVNDLVYVTDNSYNSRQILVMEKTILGNLEW 284
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 52.8 bits (121), Expect = 2e-07
Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Frame = +1
Query: 319 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSI--CAVGKSQV-QLLGTACLLLASKL 489
RR W+ + CE F LA+++LDRFLS+ GK + QLL ACL LA+K+
Sbjct: 78 RRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKI 137
Query: 490 REPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVT 624
E DL V + ELLVL+KLKW + +T
Sbjct: 138 EE-TEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAIT 181
>At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276, cyclin [Medicago
sativa] GI:1050559; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 450
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
++ +Q + T MR ++ +W++EV E+ + L + +D FL V + Q+QLL
Sbjct: 208 DFMERIQKDVTQSMRGILVDWLVEVSEEYTLASDTLYLTVYLIDWFLHGNYVQRQQLQLL 267
Query: 457 GTACLLLASKLREPRSCXSPPDL--LVFYTANSITLTDLCSWELLVLSKLKWDV 612
G C+L+ASK E S P + F T N+ T + E VL + +
Sbjct: 268 GITCMLIASKYEE----ISAPRIEEFCFITDNTYTRDQVLEMENQVLKHFSFQI 317
>At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-like
cyclin (CYC1) identical to SP|P30183 G2/mitotic-specific
cyclin (B-like cyclin) {Arabidopsis thaliana}
Length = 428
Score = 52.0 bits (119), Expect = 3e-07
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Frame = +1
Query: 295 QTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 474
Q + MR ++ EW+++V E F L ++ LDRFLS+ V + ++QL+G + LL
Sbjct: 189 QPDINEKMRLILVEWLIDVHVRFELNPETFYLTVNILDRFLSVKPVPRKELQLVGLSALL 248
Query: 475 LASKLREPRSCXSPPDL--LVFYTANSITLTDLCSWELLVLSKLKW 606
+++K E PP + LV ++ + + E +LS L+W
Sbjct: 249 MSAKYEE----IWPPQVEDLVDIADHAYSHKQILVMEKTILSTLEW 290
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 51.2 bits (117), Expect = 6e-07
Identities = 35/120 (29%), Positives = 61/120 (50%)
Frame = +1
Query: 256 ERYAVTANYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVG 435
ER++ + Q + MR ++ +W++EV + E L ++ +DRFLS V
Sbjct: 183 ERFSCVPVDYMMQQIDLNEKMRAILIDWLIEVHDKFDLINETLFLTVNLIDRFLSKQNVM 242
Query: 436 KSQVQLLGTACLLLASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVA 615
+ ++QL+G LLLA K E S D LV + + T D+ E +LS L+++++
Sbjct: 243 RKKLQLVGLVALLLACKYEEV-SVPVVED-LVLISDKAYTRNDVLEMEKTMLSTLQFNIS 300
>At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1
protein [Petunia x hybrida] GI:6093215, B-type cyclin
[Nicotiana tabacum] GI:849074; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 387
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
+Y G+ Q E MR ++ +W+++V E L I+ +DRFLS+ V + ++QLL
Sbjct: 149 DYIGS-QPEINEKMRSILIDWLVDVHRKFELMPETLYLTINLVDRFLSLTMVHRRELQLL 207
Query: 457 GTACLLLASKLREPRSCXSPP-DLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAH 630
G +L+A K E +P + V + N+ + + E +L +++W + T +
Sbjct: 208 GLGAMLIACKYEE---IWAPEVNDFVCISDNAYNRKQVLAMEKSILGQVEWYITVPTPY 263
>At1g20610.1 68414.m02575 cyclin, putative similar to
G2/mitotic-specific cyclins (B-like cyclin) from
{Medicago varia} SP|P46278, SP|P46277; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 429
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = +1
Query: 268 VTANYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQV 447
V NY Q N MR ++ +W++EV EE L I+ +DRFL++ + + ++
Sbjct: 194 VPPNYMDNQQDLNE-RMRGILIDWLIEVHYKFELMEETLYLTINVIDRFLAVHQIVRKKL 252
Query: 448 QLLGTACLLLASKLRE 495
QL+G LLLA K E
Sbjct: 253 QLVGVTALLLACKYEE 268
>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 461
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/112 (26%), Positives = 53/112 (47%)
Frame = +1
Query: 277 NYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 456
++ Q + T MR ++ +W++EV E+ + L + +D FL V + ++QLL
Sbjct: 217 DFMEKTQRDVTETMRGILVDWLVEVSEEYTLVPDTLYLTVYLIDWFLHGNYVERQRLQLL 276
Query: 457 GTACLLLASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDV 612
G C+L+ASK E + + F T N+ T + E VL + +
Sbjct: 277 GITCMLIASKYEEIHA--PRIEEFCFITDNTYTRDQVLEMESQVLKHFSFQI 326
>At1g76310.1 68414.m08864 cyclin, putative similar to B-like cyclin
GI:780267 from (Medicago sativa); contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 431
Score = 48.8 bits (111), Expect = 3e-06
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +1
Query: 259 RYAVTANYFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA-VG 435
R V NY Q + MR ++ +W++EV EE L I+ +DRFL++ +
Sbjct: 191 RSCVPPNYMEN-QHDINERMRGILFDWLIEVHYKFELMEETLYLTINLIDRFLAVHQHIA 249
Query: 436 KSQVQLLGTACLLLASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWD 609
+ ++QL+G +LLA K E D L+ + + T T++ E L+ + L+++
Sbjct: 250 RKKLQLVGVTAMLLACKYEE--VSVPVVDDLILISDKAYTRTEILDMEKLMANTLQFN 305
>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
D2.1 protein [Nicotiana tabacum] GI:4160298; contains
Pfam profile PF00134: Cyclin, N-terminal domain
Length = 298
Score = 48.4 bits (110), Expect = 4e-06
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Frame = +1
Query: 337 WMLEVCEDRGCQEEVFPLAISFLDRFLSICAV--GKS-QVQLLGTACLLLASKLREPRSC 507
W+ + CE+ LA+++LDRFLS+ + GK+ VQLL ACL LA+K+ E
Sbjct: 75 WIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEE---- 130
Query: 508 XSPPDLLVFYTANSITLTDLCS---WELLVLSKLKWDVAGVT 624
+ P+L+ + + + S ELLVL+ L+W + VT
Sbjct: 131 TNVPELMQLQVGAPMFVFEAKSVQRMELLVLNVLRWRLRAVT 172
>At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25011
G2/mitotic-specific cyclin S13-6 (B-like cyclin)
{Glycine max}; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 396
Score = 48.0 bits (109), Expect = 5e-06
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Frame = +1
Query: 280 YFGTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLG 459
++ + E +P R ++ W++EV E L + LDR+LS + K+++QL+G
Sbjct: 163 HYLSAHAEVSPVTRGILINWLIEVHFKFDLMHETLYLTMDLLDRYLSQVPIHKNEMQLIG 222
Query: 460 TACLLLASKLRE---PRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAH 630
LLLASK + PR L+ +A S T + E +L +LK+ + T +
Sbjct: 223 LTALLLASKYEDYWHPRIKD-----LISISAESYTREQILGMERSMLKQLKFRLNAPTPY 277
>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
cyclin-like protein [Arabidopsis thaliana] GI:20302467;
low similarity to SP|P30278 G2/mitotic-specific cyclin 2
(B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 578
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 310 PHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL-GTACLLLASK 486
P +R ++ +W+++ C D G Q+E L + LDRFLS + + +L G A L LA++
Sbjct: 384 PRLRSIMVQWIVKQCSDMGLQQETLFLGVGLLDRFLSKGSFKSERTLILVGIASLTLATR 443
Query: 487 LRE 495
+ E
Sbjct: 444 IEE 446
>At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42753
Cyclin delta-3 {Arabidopsis thaliana}; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 323
Score = 44.4 bits (100), Expect = 6e-05
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Frame = +1
Query: 283 FGTVQTENTPHMRRLVA-EWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ----- 444
F T+ ++ T RL+A +W+L G Q + +AIS+ D FL +G +
Sbjct: 59 FETLPSKTTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWA 118
Query: 445 VQLLGTACLLLASKLRE---PRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVA 615
++LL ACL LA+K+ E P P D + + I T ELL+LS L W +
Sbjct: 119 MRLLSVACLSLAAKMEERIVPGLSQYPQDHDFVFKPDVIRKT-----ELLILSTLDWKMN 173
Query: 616 GVT 624
+T
Sbjct: 174 LIT 176
>At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to
SP|P42752 Cyclin delta-2 {Arabidopsis thaliana}
Length = 361
Score = 43.2 bits (97), Expect = 1e-04
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Frame = +1
Query: 316 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASK 486
+R +W+L+VC L++++LDRFL+ + K + QLL +CL LASK
Sbjct: 96 VRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASK 155
Query: 487 LREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVT 624
+ E DL V + ELLV++ L W + +T
Sbjct: 156 MEE-TDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALT 200
>At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical to
SP|P42751 Cyclin delta-1 {Arabidopsis thaliana}
Length = 339
Score = 41.5 bits (93), Expect = 4e-04
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Frame = +1
Query: 256 ERYAVTAN-YFGTVQTENTP-HMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 429
ER+ V + Y QT + R W+L+V Q LA++++DRFL
Sbjct: 59 ERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARR 118
Query: 430 VGKSQ---VQLLGTACLLLASKLREPRSCXSPPDLLVFYTANSITLTD---LCSWELLVL 591
+ ++ +QLL ACL LA+K+ E P L F A L + + ELLVL
Sbjct: 119 LPETSGWPMQLLAVACLSLAAKMEE----ILVPSLFDFQVAGVKYLFEAKTIKRMELLVL 174
Query: 592 SKLKWDVAGVT 624
S L W + VT
Sbjct: 175 SVLDWRLRSVT 185
>At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to
SP|P42753 Cyclin delta-3 {Arabidopsis thaliana}
Length = 376
Score = 41.1 bits (92), Expect = 6e-04
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Frame = +1
Query: 319 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKL 489
R+ W+L V G LAI++LD+F+ ++ + + +QL+ ACL LA+K+
Sbjct: 87 RKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKV 146
Query: 490 REPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVT 624
E + D V T + ELL+LS L+W + +T
Sbjct: 147 EETQ-VPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLIT 190
>At1g34460.1 68414.m04281 cyclin, putative strong similarity to
cyclin [Arabidopsis thaliana] GI:1360646
Length = 504
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 292 VQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQL 453
+QTE MR ++ +W+LEV E L ++ +DRFL + AV K ++Q+
Sbjct: 295 IQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFLYVKAVPKRELQV 348
>At4g03270.1 68417.m00446 cyclin family protein similar to CycD3;2
[Lycopersicon esculentum] GI:6434199 ; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 302
Score = 35.9 bits (79), Expect = 0.022
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Frame = +1
Query: 388 LAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKLREP-RSCXSPPDLLVFYTANSIT 555
LA+++LDRFLS + +S+ ++L+ +C+ L++K+R+P S P F+ A I
Sbjct: 80 LAVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRKPDMSVSDLPVEGEFFDAQMIE 139
Query: 556 LTDLCSWELLVLSKLKWDVAGVT 624
E ++L LKW + VT
Sbjct: 140 -----RMENVILGALKWRMRSVT 157
>At3g50070.1 68416.m05474 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300, CycD3;2
[Lycopersicon esculentum] GI:6434199; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 361
Score = 35.9 bits (79), Expect = 0.022
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Frame = +1
Query: 319 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKL 489
R +W+ +V G LA+++ DRF++ + QL ACL LA+K+
Sbjct: 86 REKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKV 145
Query: 490 REPRSCXSPPDLLVFYTANS---ITLTDLCSWELLVLSKLKWDVAGVT 624
E R P LL F + + ELLVLS L W + VT
Sbjct: 146 EEIR----VPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVT 189
>At5g67260.1 68418.m08478 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 367
Score = 35.1 bits (77), Expect = 0.039
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +1
Query: 319 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKL 489
R+ +W+L V G LA+++ DRF++ + + QL+ A L LA+K+
Sbjct: 96 RKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKV 155
Query: 490 REPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVT 624
E + DL V + ELL+LS L+W + VT
Sbjct: 156 EEIQ-VPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVT 199
>At5g19540.1 68418.m02327 expressed protein
Length = 462
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 475 LASKLREPRSCXSPPDLLVFYTANSITLTDLCSWELLVLSKLKW 606
+A LR P + LL+F +S+ DLC WEL S + W
Sbjct: 404 MAEALRWPLNRYQTLALLIF---SSVLALDLCFWELFFGSTIDW 444
>At1g08320.1 68414.m00920 bZIP family transcription factor contains
Pfam profile: PF00170 bZIP transcription factor
Length = 481
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -1
Query: 533 KTSRSGGEXHDLGSRSLEANSRQAVPKSCT*LFPTAQMLKNRSRNDIASGKTSSWQPRSS 354
++S+SGGE D GS + + P+S + ++ N++A+ ++S P +S
Sbjct: 96 ESSKSGGESSDSGSANFSGKAESQQPESP--MSSKHHLMLQPHHNNMANSSSTSGLPSTS 153
Query: 353 HT 348
T
Sbjct: 154 RT 155
>At1g11930.2 68414.m01379 alanine racemase family protein contains
Pfam domain, PF01168: Alanine racemase, N-terminal
domain
Length = 255
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 286 GTVQTENTPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGT 462
G +TP +L+A+ EVC++ G EE L++ F +G + V++ T
Sbjct: 187 GMADYTSTPENFKLLAKCRSEVCKELGIPEEQCELSMGMSGDFELAIELGSTNVRIGST 245
>At3g18630.1 68416.m02367 uracil DNA glycosylase family protein
contains Pfam profile: PF03167 uracil DNA glycosylase
superfamily
Length = 330
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 457 PKVALDFFPPRRCSRTDPGTIS-PVERLLLGSRDL 356
PK +DFF P + + P + S P + GSRDL
Sbjct: 6 PKTLMDFFQPAKRLKASPSSSSFPAVSVAGGSRDL 40
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,233,919
Number of Sequences: 28952
Number of extensions: 251248
Number of successful extensions: 713
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -