BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021871 (626 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839... 27 9.2 >02_04_0498 + 23480930-23481186,23483615-23483705,23483790-23483935, 23484029-23484248,23484314-23484422,23484518-23484686, 23484801-23484975 Length = 388 Score = 27.5 bits (58), Expect = 9.2 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 615 LQFLSVGNFKGIFNSFIVNSVEFFFTSFLMPYHNFTFRNLNT 490 L F++ NFK + F+ +S+ F T L PY F F + T Sbjct: 185 LYFMATRNFKKAASLFL-DSISTFTTYELFPYDTFVFYTVIT 225 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,806,818 Number of Sequences: 37544 Number of extensions: 157770 Number of successful extensions: 180 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 177 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 180 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1525730988 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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