Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021871
         (626 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M23102-1|AAA36770.1|  790|Homo sapiens protein ( Human trk proto...    30   7.7  
BC062580-1|AAH62580.1|  795|Homo sapiens NTRK1 protein protein.        30   7.7  
AL158169-4|CAH70010.1|  790|Homo sapiens neurotrophic tyrosine k...    30   7.7  
AB019488-1|BAA34355.1|  796|Homo sapiens TRKA protein.                 30   7.7  

>M23102-1|AAA36770.1|  790|Homo sapiens protein ( Human trk
           proto-oncogene insert of pLM6. ).
          Length = 790

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 594 NFKGIFNSFIVNSVEFFFTSFLMPYHNFTFRN 499
           + + +FN  ++N   F FT FL P  N T R+
Sbjct: 312 SLRWLFNGSVLNETSFIFTEFLEPAANETVRH 343


>BC062580-1|AAH62580.1|  795|Homo sapiens NTRK1 protein protein.
          Length = 795

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 594 NFKGIFNSFIVNSVEFFFTSFLMPYHNFTFRN 499
           + + +FN  ++N   F FT FL P  N T R+
Sbjct: 311 SLRWLFNGSVLNETSFIFTEFLEPAANETVRH 342


>AL158169-4|CAH70010.1|  790|Homo sapiens neurotrophic tyrosine
           kinase, receptor, type 1 protein.
          Length = 790

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 594 NFKGIFNSFIVNSVEFFFTSFLMPYHNFTFRN 499
           + + +FN  ++N   F FT FL P  N T R+
Sbjct: 312 SLRWLFNGSVLNETSFIFTEFLEPAANETVRH 343


>AB019488-1|BAA34355.1|  796|Homo sapiens TRKA protein.
          Length = 796

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 594 NFKGIFNSFIVNSVEFFFTSFLMPYHNFTFRN 499
           + + +FN  ++N   F FT FL P  N T R+
Sbjct: 312 SLRWLFNGSVLNETSFIFTEFLEPAANETVRH 343


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,797,349
Number of Sequences: 237096
Number of extensions: 1052751
Number of successful extensions: 1379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)