Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021870X
         (483 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   1.5  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   4.5  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   6.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   6.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.9  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 166 PDL-VNDVHVSMSKNSRQPYCVSKEAGHQTRLNHGVLDVL 282
           PD  + ++ V + +   + YC+    G    +N  V DVL
Sbjct: 318 PDAGLGNLSVCIDQQPWRSYCIQPPCGQLNPINPNVFDVL 357


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 124 HPAPSHSSLNTPTL 83
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 400 TVASTSDSGERPLRHRCC 453
           T    + SGERP R R C
Sbjct: 66  TTHMRTHSGERPYRCRLC 83



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 421 SGERPLRHRCCYRRPSARS 477
           SGE+P R   C RR S  S
Sbjct: 45  SGEKPFRCPVCDRRFSQSS 63


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 400 TVASTSDSGERPLRHRCC 453
           T    + SGERP R R C
Sbjct: 322 TTHMRTHSGERPYRCRLC 339



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 421 SGERPLRHRCCYRRPSARS 477
           SGE+P R   C RR S  S
Sbjct: 301 SGEKPFRCPVCDRRFSQSS 319


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 138 PVRVQGAHPSGPGQ*CSRFYVQELEAAL 221
           PVR+ G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,555
Number of Sequences: 336
Number of extensions: 2191
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)