Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021870X
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    99   3e-22
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    99   3e-22
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   2.0  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   2.6  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   3.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   4.5  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 99.1 bits (236), Expect = 3e-22
 Identities = 42/53 (79%), Positives = 46/53 (86%)
 Frame = +3

Query: 255 AESWGTGRAVARIPRVRGGGTHRSGHGAFGNMCRGGRIFAPTKRCRRWHRRVN 413
           AESWGTGRA+ARIPRV GGGTHRSG  AFGNMCR GR+FAPTK  R+WH +VN
Sbjct: 64  AESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 81.0 bits (191), Expect = 9e-17
 Identities = 37/63 (58%), Positives = 47/63 (74%)
 Frame = +1

Query: 64  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 243
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 244 HQT 252
           HQT
Sbjct: 60  HQT 62


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 99.1 bits (236), Expect = 3e-22
 Identities = 42/53 (79%), Positives = 46/53 (86%)
 Frame = +3

Query: 255 AESWGTGRAVARIPRVRGGGTHRSGHGAFGNMCRGGRIFAPTKRCRRWHRRVN 413
           AESWGTGRA+ARIPRV GGGTHRSG  AFGNMCR GR+FAPTK  R+WH +VN
Sbjct: 64  AESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 81.8 bits (193), Expect = 5e-17
 Identities = 38/63 (60%), Positives = 47/63 (74%)
 Frame = +1

Query: 64  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 243
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 244 HQT 252
           HQT
Sbjct: 60  HQT 62


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 157  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTRLNHG 267
            P + +L+ +V +    +  +P+  SKEA H+ +L HG
Sbjct: 1073 PEKKELLQEVVID---HDLEPFEASKEAAHEFKLRHG 1106


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 125 APCTVSLFSEYTDTKGRATDRLISLL 48
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 82  KVG-LPIDSFRYFSEAIPLKY-TLIAVI 5
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 PALAPSRQPPTAESGLCGTVAATGVP 466
           P  +P+   PT+ +    T+AAT +P
Sbjct: 212 PGFSPATPAPTSAANTPATIAATSIP 237


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 63  SIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGP 173
           SI SP+ SVG   +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,279
Number of Sequences: 5004
Number of extensions: 33975
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)