Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021870X
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   106   7e-24
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    30   0.77 
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    30   0.77 
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   4.1  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   7.1  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   9.4  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  106 bits (255), Expect = 7e-24
 Identities = 46/55 (83%), Positives = 48/55 (87%)
 Frame = +3

Query: 249 NQAESWGTGRAVARIPRVRGGGTHRSGHGAFGNMCRGGRIFAPTKRCRRWHRRVN 413
           + AESWGTGRAVARIPRVRGGGTHRSG GAFGNMCRGG +FAP K  RRWHR VN
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVN 115



 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 29/59 (49%), Positives = 39/59 (66%)
 Frame = +1

Query: 73  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 249
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 234  GGWSPNQAESWGTGRAVARIPRV-----RGGGTHRSGHGAFGNMCRGGRIFAP 377
            G   P+Q +     + +  IP+V      GGG  R G+G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 234  GGWSPNQAESWGTGRAVARIPRV-----RGGGTHRSGHGAFGNMCRGGRIFAP 377
            G   P+Q +     + +  IP+V      GGG  R G+G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 360 HHDTCYRRHRDRTYEYHHHGHAEFGRQH 277
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
 Frame = -1

Query: 414 G*RDGANAGSASWGRRYVHHDT-----CYRRHRDRTYEYHHHGH 298
           G   GA+   A  G    HH+       +  H D    +HHHGH
Sbjct: 674 GTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGH 717


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +1

Query: 58  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 231
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 164 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 51
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 164 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 51
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 173 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 60
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 173 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 60
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,195
Number of Sequences: 27780
Number of extensions: 212814
Number of successful extensions: 840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)