Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021870X
(483 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 105 2e-23
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 105 2e-23
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein... 31 0.54
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 1.2
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 1.2
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 29 1.2
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.2
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 29 1.6
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins... 29 2.2
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 2.9
At4g36980.1 68417.m05240 expressed protein 28 2.9
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 2.9
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 3.8
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 28 3.8
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 28 3.8
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 28 3.8
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M... 27 6.6
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 6.6
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 27 8.8
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 8.8
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 105 bits (251), Expect = 2e-23
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = +3
Query: 255 AESWGTGRAVARIPRVRGGGTHRSGHGAFGNMCRGGRIFAPTKRCRRWHRRVN 413
AESWGTGRAV+RIPRV GGGTHR+G AFGNMCRGGR+FAPTK RRWHRRVN
Sbjct: 70 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVN 122
Score = 69.7 bits (163), Expect = 9e-13
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +1
Query: 67 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 240
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 241 GHQT 252
GHQT
Sbjct: 65 GHQT 68
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 105 bits (251), Expect = 2e-23
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = +3
Query: 255 AESWGTGRAVARIPRVRGGGTHRSGHGAFGNMCRGGRIFAPTKRCRRWHRRVN 413
AESWGTGRAV+RIPRV GGGTHR+G AFGNMCRGGR+FAPTK RRWHRRVN
Sbjct: 69 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVN 121
Score = 71.7 bits (168), Expect = 2e-13
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Frame = +1
Query: 58 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 231
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 232 KEAGHQT 252
K+AGHQT
Sbjct: 61 KKAGHQT 67
>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
similar to NAM family proteins GP|12751304|,
GP|6223650|, GP|9758909 - Arabidopsis
thaliana,PIR2:T04621
Length = 498
Score = 30.7 bits (66), Expect = 0.54
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = -1
Query: 369 RYVHHDTCYRRHRDRTYEYHHHGHAEFGRQHVQYPMIQPGLVTSLLAHAVGLPRVLGHRN 190
R+ H + H +++HHH H + ++H + + QP T ++ + L H +
Sbjct: 344 RHRHQPSSSTSHH-MAHDHHHHHHQQQQQRHHAFNISQP---THPISTIISPSTSLHHAS 399
Query: 189 VNIID 175
+NI+D
Sbjct: 400 INILD 404
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 372 RRYVHHDTCYRRHRDRTY-EYHHHGHAEFGRQHVQYPMIQPG 250
R + H + +HRD + E+HHH H R+H ++ G
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEHG 776
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 372 RRYVHHDTCYRRHRDRTY-EYHHHGHAEFGRQHVQYPMIQPG 250
R + H + +HRD + E+HHH H R+H ++ G
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEHG 776
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 231 QGGWSPNQAESWGTGRAVARIPRVRGGGTHRSGHGAFGNMCRGGRIFAPTKRCRR 395
QGG Q G GR R +GGG + G G+ G+ CR G + C R
Sbjct: 79 QGGGGRYQG---GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHGCCYRGYNGCSR 130
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 82 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 228
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 387 SASWGRRYVHHDTCYRRHRDRTYEYHHHGHAEF 289
+A+ HH Y H Y Y +HGH +F
Sbjct: 113 AAAGAHHMSHHHGHYGHHHGHGYGYGYHGHGKF 145
>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 159
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 234 GGWSPNQAESWGTGRAVARIPRVRGGGTHRSGHGAFG 344
G S S G + IP + GGGTHRSGH + G
Sbjct: 103 GSSSRGGGGSSSRGGGLRPIP-IYGGGTHRSGHHSSG 138
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 133 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 228
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 133 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 228
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -1
Query: 408 RDGANAGSASWGRRYVHHDTCYRRHRDRTYEYHHHGHAEFGRQHVQYP 265
RD S S GR+ +HHD R TYE + R P
Sbjct: 268 RDRERETSRSVGRQIIHHDPYRESRRSPTYEAYPRSRRSRSRSRSYSP 315
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -1
Query: 360 HHDTCYRRHRDRTYEYHHHGHAEFGRQH 277
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 136 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 23
G W+H SH+ ++ L VG+ + Y+S + P++Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 456 VAATVPQRPLSAVGG*RDGANAGSASWGRRYVHHDT 349
+A+ VPQ + VGG G++ SA+ +R HH +
Sbjct: 445 LASAVPQDARTTVGGCSSGSSLSSANATKRNNHHSS 480
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 237 GWSPNQAESWGTGRAVARIPRVRGGGTHRSGHGAFGNMCRGGRIFAPTKR 386
G P Q + +G + R RGG H+ G G +G GG P +R
Sbjct: 65 GQPPQQQQQYGGPQEYQG--RGRGGPPHQGGRGGYGGGRGGGPSSGPPQR 112
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 237 GWSPNQAESWGTGRAVARIPRVRGGGTHRSGHGAFGNMCRGGRIFAPTKR 386
G P Q + +G + R RGG H+ G G +G GG P +R
Sbjct: 65 GQPPQQQQQYGGPQEYQG--RGRGGPPHQGGRGGYGGGRGGGPSSGPPQR 112
>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
Myosin heavy chain, non-muscle (Zipper protein) (Myosin
II)(SP:Q99323) {Drosophila melanogaster}
Length = 761
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +2
Query: 401 PSRQPPTAESGLCGTVAATGVPA 469
PS QP T ESG TVAA PA
Sbjct: 729 PSEQPTTGESGENKTVAADPEPA 751
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -1
Query: 357 HDTCYRRHRDRTYEYHHHGHAEFGRQHVQYPMIQP 253
H+ C H D ++ H H H E H + QP
Sbjct: 608 HEECNHNH-DHEHQSHSHNHEECNHNHDHHSDHQP 641
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 26.6 bits (56), Expect = 8.8
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Frame = -1
Query: 432 PLSAVGG*RDGANAGSASWGRRYVHHDTCYRRHRDRTYEYHHHGHAEFGRQ------HVQ 271
PL + G + NAG + +G Y H ++ +++ HAE G Q +
Sbjct: 156 PLPSRSGTNNIRNAGGSRFGADYSHPAVSAVGNKSTFGDHYSGAHAEIGIQRGVNGVRIL 215
Query: 270 YPMIQPGLVTSLLAHA 223
P + G S+L HA
Sbjct: 216 PPSLTHGTSASVLHHA 231
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 408 RDGANAGSASWGRRYVHHDTCYRRHRDRTYEYHHH-GHAEFG 286
R N+ W R++ HH+ +R +Y H GH++ G
Sbjct: 328 RSYKNSRENEWSRQHNHHNGNGKRFNSNSYRGKEHLGHSDRG 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,799,862
Number of Sequences: 28952
Number of extensions: 206540
Number of successful extensions: 757
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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