Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021869
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 29 0.55
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 3.0
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.9
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe... 26 3.9
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 26 5.2
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 5.2
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 26 5.2
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 26 5.2
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 6.8
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.8
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 29.1 bits (62), Expect = 0.55
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 137 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 45
AR F +F V+ N DCN TPH +S
Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 419 LGLCSLDACRRSSTPKKFELIQGRECAPGSRGRTSVTV 532
L L +L CR S K E+ G +CA G T +V
Sbjct: 89 LALQALKHCRESLPNKSIEIDMGNQCASGLADVTVASV 126
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 589 CVQCRLRHYKCRIHRHCTYNCY 524
C+ CR R KC +R C +NC+
Sbjct: 26 CLYCRRRKIKCDKNRPC-HNCF 46
>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
phosphopantetheinyl transferase Lys7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 57 EMRCLIAICFIVLARHCESGALKCSP 134
+M +A+ I++ RH S AL+CSP
Sbjct: 43 DMDAKMALASILIKRHLVSTALECSP 68
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 178 NRVR*QQMTRLPSKKCSPKWNAWREPVGEQL 270
NR Q++ SKKC +W + EP+ +++
Sbjct: 42 NRDSLQELASFVSKKCGSQWRSQCEPLLDEI 72
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 589 CVQCRLRHYKCRIHRHCTYNCYTGSTTRS 503
C+ CR + KC R C+ NC ST +S
Sbjct: 23 CLACRRKKLKCDHGRPCS-NCLKRSTIQS 50
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 589 CVQCRLRHYKCRIHRHCTYNC 527
C+ CR R KC + YNC
Sbjct: 46 CLTCRKRRIKCDERKPICYNC 66
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 365 PGTSFQRDCNTCVCLDNGL 421
P TSF D N CV D+GL
Sbjct: 236 PATSFIYDFNACVFCDDGL 254
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/34 (29%), Positives = 13/34 (38%)
Frame = +2
Query: 251 NQWESNCHFCRCSDSGVAECLRQDSCDQIIFTEP 352
N W NC CR +G + D+I P
Sbjct: 1398 NSWIGNCQLCRTRVTGYKRKIYGKKADKIAMDSP 1431
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 80 LFYRFGATLRKWS 118
+FYRFG ++R WS
Sbjct: 528 IFYRFGKSIRAWS 540
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 605 FYGSIMCSVQASSLQMPYPSALHLQLLHWFDH 510
FY SI+C + +L + P +++ LH+F H
Sbjct: 35 FY-SILCFLSFFALLLHLPCSIYSHTLHFFHH 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,472
Number of Sequences: 5004
Number of extensions: 57434
Number of successful extensions: 193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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