Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021869
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 30 1.3
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 30 1.7
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 3.0
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 7.0
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 28 7.0
07_03_0898 - 22403337-22404950 27 9.3
07_03_0896 + 22373348-22374946 27 9.3
06_03_0900 - 25789327-25789662 27 9.3
06_02_0232 + 13289896-13289992,13290168-13290242,13290386-13290552 27 9.3
06_02_0220 - 13205700-13205863,13205977-13206046 27 9.3
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 27 9.3
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835 27 9.3
01_05_0493 + 22691391-22691457,22691607-22691776 27 9.3
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/84 (21%), Positives = 34/84 (40%)
Frame = +2
Query: 98 ATLRKWSPKMQSWHRRPVCSRARIKRQTESDNNR*RVCRPRNAVRSGMPGGNQWESNCHF 277
A + +W P M++WH + +A++ Q ++ + G G+ E CH
Sbjct: 669 ADVSEWQPSMKNWHTKDY-EKAKVHLQCDNGQKITEIKFASFGTPQG-SCGSYTEGGCHA 726
Query: 278 CRCSDSGVAECLRQDSCDQIIFTE 349
+ D C+ Q+ C + E
Sbjct: 727 HKSYDIFWKNCVGQERCGVSVVPE 750
>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
Length = 478
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 93 LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 218
+A E +K P +GP A S+ K ++ DDA AV+
Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 441 ASKEHRPRPLSKQTQVLQSLWKEVPG 364
+S + PR + +++Q++WKEVPG
Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 347 EPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKK 469
EP G F+ +TC+ G+GL + A + S P++
Sbjct: 42 EPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRR 82
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 612 TFFLWLDNVFSAGFVITNAVSIGIAPTTVTLVRPRDPGAHSL 487
TF+ +VF+ GFV N I +AP + RP D GA ++
Sbjct: 262 TFYSGSVSVFATGFVAKNISFINVAP----IPRPGDVGAQAV 299
>07_03_0898 - 22403337-22404950
Length = 537
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 102 HCESGA-LKCSPGTEGPCA 155
HC +GA CSPG PCA
Sbjct: 69 HCTAGADPSCSPGAASPCA 87
>07_03_0896 + 22373348-22374946
Length = 532
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 102 HCESGA-LKCSPGTEGPCA 155
HC +GA CSPG PCA
Sbjct: 70 HCTAGADPSCSPGAASPCA 88
>06_03_0900 - 25789327-25789662
Length = 111
Score = 27.5 bits (58), Expect = 9.3
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Frame = +2
Query: 221 NAVRSGMPGGNQWESNCHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNTC 400
N+ G+ +QWE CH+ +GVA C E + + F+R C T
Sbjct: 5 NSRCDGLGMDDQWERQCHW---QAAGVASSSASSGCGVFDVDEALEQRERWRFRRRCATS 61
Query: 401 --VCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSRGRTSV 526
+ LG A + T +L Q +P S+ S+
Sbjct: 62 SGAAMATDLG----PAAAATPTSSGLDLRQATAASPQSQHSVSI 101
>06_02_0232 + 13289896-13289992,13290168-13290242,13290386-13290552
Length = 112
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 290 QSTCRSGSCSPTGSRQAFH 234
QS CR G C P G R H
Sbjct: 91 QSQCRGGECKPRGGRHFCH 109
>06_02_0220 - 13205700-13205863,13205977-13206046
Length = 77
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 290 QSTCRSGSCSPTGSRQAFH 234
QS CR G C P G R H
Sbjct: 56 QSQCRGGECKPRGDRHFCH 74
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 107 RKWSPKMQSWHRRPVCSRARIKRQTESDNNR 199
R+ S K W+R +R R+K T SD R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607
>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
Length = 379
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 553 IHRHCTYNCYTGSTTRSRSAFSALDQLKLL 464
+HRHC + TG RS F + D L+++
Sbjct: 169 VHRHCYFLRTTGVDYRSEKMFMSKDYLEMM 198
>01_05_0493 + 22691391-22691457,22691607-22691776
Length = 78
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 290 QSTCRSGSCSPTGSRQAFH 234
QS CR G C P G R H
Sbjct: 57 QSQCRGGECKPRGDRHFCH 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,903,846
Number of Sequences: 37544
Number of extensions: 446106
Number of successful extensions: 1274
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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