Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021869
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   33   0.19 
SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)                32   0.44 
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)                     31   0.77 
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.77 
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         30   1.8  
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)        28   5.4  
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)                        28   5.4  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   9.5  
SB_33951| Best HMM Match : Gamma-thionin (HMM E-Value=5)               27   9.5  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   27   9.5  
SB_5490| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 281 RCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDAC 445
           R +  G  +C+++  C  I   +  +  PG    +DC  CVC D  L  C+   C
Sbjct: 224 RVNAVGKVQCIKRKECPCIHDAKIYK--PGDKVYKDCQLCVCKDGQLTNCTGQKC 276


>SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)
          Length = 338

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
 Frame = +2

Query: 269 CHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPG-TSFQRDCNTCVCLDNGLGLCSLDAC 445
           CH   CS SG+  C +  SC   I +    C+PG T    +C  C  +    G  S  A 
Sbjct: 215 CHIDECS-SGINNCHQDASCANTIGSFACTCKPGYTGDGINCADC-AMGMESGAISDSAI 272

Query: 446 RRSSTPKKFELIQGR----ECAPGSRGRTSV 526
             SS  +K     GR       PG+  R +V
Sbjct: 273 TASSYLEKLRPSNGRLNDPSVFPGNTDRNTV 303


>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 320

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 305 EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 463
           EC +RQD+C    +T P+ C P ++F  D    +TC   D+      ++ C ++  P
Sbjct: 44  ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 100


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 305  EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 463
            EC +RQD+C    +T P+ C P ++F  D    +TC   D+      ++ C ++  P
Sbjct: 1018 ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 1074


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = -2

Query: 599  GSIMCSVQASSLQMPYPSALHLQLLHWFDHAIPERILCPGSA-----QTSWELTIFYRHP 435
            G+   +++A +  +P  S+L + +  W +H +P  +LC   A     ++SW   ++ R P
Sbjct: 2028 GNARKAIEALAPLVPEMSSLGVPICDWHEHCLPFSLLCDCLAECEDIESSWLQEVYQRLP 2087

Query: 434  RSIGPD 417
              +  D
Sbjct: 2088 CRVAAD 2093


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = +2

Query: 371  TSFQRDCNTCVCLDNGLG----LCSLDACRRSSTPKKFELIQGRECAP 502
            T+ + DCNTC C+         +C  D C  SST        G  C P
Sbjct: 1195 TTVKEDCNTCSCVHGTRTCTKVVCGPDNCLNSSTVSNDICSMGSVCVP 1242


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/87 (26%), Positives = 30/87 (34%)
 Frame = +2

Query: 173 RQTESDNNR*RVCRPRNAVRSGMPGGNQWESNCHFCRCSDSGVAECLRQDSCDQIIFTEP 352
           R   S N R   C   +   S     N   + C   R + S  +      S       EP
Sbjct: 213 RSNTSANTRANTCSNTSTYTSTNTRANTSSNTCADTRSNTSTSSYTGTNTSASYCRTPEP 272

Query: 353 VRCQPGTSFQRDCNTCVCLDNGLGLCS 433
            RC P  +F  D   C  + NGL + S
Sbjct: 273 -RCPPLVNFSLDLPECFAIRNGLQVVS 298


>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 368 GTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELI-QGRE 493
           G     DCN+CVC   G  +C+   C  SS   K  L+ QG +
Sbjct: 256 GAEIPTDCNSCVCA-CGRWVCTALDCNPSSNHVKASLVLQGEQ 297


>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
          Length = 350

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -3

Query: 580 CRLRHYKCRIHRHCT--YNCYTGSTTRSRSAF 491
           C++++Y CR  R C   Y  Y G   R R  +
Sbjct: 128 CKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCY 159


>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
          Length = 165

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -3

Query: 580 CRLRHYKCRIHRHCT--YNCYTGSTTRSRSAF 491
           C++++Y CR  R C   Y  Y G   R R  +
Sbjct: 65  CKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCY 96


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 107  AVSRQNDKTDCNQTPHFTQSSITTLFSTREVH 12
            AV + +   DC  TPH+  S++ T F+ +  +
Sbjct: 1408 AVDKDDGMLDCTLTPHYGLSALKTSFAEKSAN 1439


>SB_33951| Best HMM Match : Gamma-thionin (HMM E-Value=5)
          Length = 174

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +1

Query: 517 NQCNSCRCNAD----GYGICNDEACTEHI 591
           +Q +S  CN D    GYG CN +AC  ++
Sbjct: 116 SQISSIHCNQDTRPPGYGPCNTQACPANL 144


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
 Frame = +2

Query: 257  WESNCHFCRC--SDSGVAECLR-----QDSCDQIIFTEPVRCQPGTSF-QRDCNTCVCLD 412
            WE N   C+C  +D+   +C         SC  +    P  C  G  + QR C  CVC  
Sbjct: 814  WEPNNCLCKCRYADTQPKKCPEGHRWSASSCSCMCDKAPEVCPVGKYWSQRSCG-CVCSA 872

Query: 413  NGLGLCS 433
            + +G C+
Sbjct: 873  HVVGACN 879


>SB_5490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +2

Query: 119 PKMQSWHRRPVCSRARIKRQTESDNNR*RVCRPRNAV---RSGMPGGNQWESNCHFCRCS 289
           P   SW  RP+ S + + +Q   D N     R  N++     G P  ++  ++ +  + S
Sbjct: 417 PLGDSWKSRPIGSISSVAKQPLRDTNLTETSRKTNSITGKHDGYPHNDEISASYNTTKTS 476

Query: 290 DSGVAECLR 316
           ++G  +  R
Sbjct: 477 ENGTQKDCR 485


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/78 (23%), Positives = 32/78 (41%)
 Frame = -1

Query: 609 FFLWLDNVFSAGFVITNAVSIGIAPTTVTLVRPRDPGAHSLPWISSNFLGVDDLLQASKE 430
           +  W D+      VI  A   G    TV  V  ++P   ++ WI+ N    D  +   + 
Sbjct: 522 YIYWSDDTLQ---VIKRAHIDGKGVETVASVEVQNPEGIAVDWIARNLYWTDTGMDRIEV 578

Query: 429 HRPRPLSKQTQVLQSLWK 376
            R    S++  + + LW+
Sbjct: 579 SRLNGTSRKILISEDLWE 596


>SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 173 F*FLLCCTRAFCARTAF 123
           F F++CCT  FCA T F
Sbjct: 247 FTFVICCTPCFCALTYF 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,873,666
Number of Sequences: 59808
Number of extensions: 529709
Number of successful extensions: 1600
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)