Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021869
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur s...    31   0.83 
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s...    30   1.1  
At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    29   3.4  
At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp...    27   7.8  
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila...    27   7.8  

>At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-2) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-2) [gi:12049600] from Arabidopsis thaliana
          Length = 280

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 24/63 (38%), Positives = 27/63 (42%)
 Frame = +1

Query: 421 GPMLLGCL*KIVNSQEV*ADPGQRMRSGIAWSNQCNSCRCNADGYGICNDEACTEHIIEP 600
           GPM+L  L KI N  +      +  R GI     C SC  N DG   CN  AC   I   
Sbjct: 77  GPMVLDALIKIKNEMDPSLTFRRSCREGI-----CGSCAMNIDG---CNGLACLTKIESG 128

Query: 601 *KE 609
            KE
Sbjct: 129 SKE 131


>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-1) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
          Length = 279

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +1

Query: 421 GPMLLGCL*KIVNSQEV*ADPGQRMRSGIAWSNQCNSCRCNADGYGICNDEACTEHI 591
           GPM+L  L KI N  +      +  R GI     C SC  N DG   CN  AC   I
Sbjct: 78  GPMVLDALIKIKNEMDPSLTFRRSCREGI-----CGSCAMNIDG---CNGLACLTKI 126


>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
           similarity to SPL1-Related2 protein [Arabidopsis
           thaliana] GI:6006427; contains Pfam profile PF03110: SBP
           domain
          Length = 1035

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +2

Query: 212 RPRNAVRSGMPGGNQWESNCHFCRCSDSGVAECLRQDS-CDQIIFTEPVRCQPGTSFQRD 388
           RP   VRSG PGGN        C    S   +  R+   C+  + ++  +   G   QR 
Sbjct: 103 RPNKKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCE--VHSKATKALVGKQMQRF 160

Query: 389 CNTC 400
           C  C
Sbjct: 161 CQQC 164


>At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein weak similarity to
           spliceosome-associated-protein 114 [Echinococcus
           multilocularis] GI:11602721; contains Pfam profile
           PF01805: Surp module
          Length = 285

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 455 TIFYRHPRSIGPDRYLSRRKCYNPSGRRC 369
           T F    RS     +LSRR CY P  +RC
Sbjct: 107 TSFRTRVRSFTTSLWLSRRGCYFPVEKRC 135


>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
           to receptor-like protein kinase [Arabidopsis thaliana]
           gi|4008008|gb|AAC95352; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 840

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 562 KCRIHRHCTYNCYTGSTTRSRSAFSAL 482
           KC I+ HC +N Y  ST+  +   S L
Sbjct: 286 KCDIYNHCGFNGYCDSTSTEKFECSCL 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,454
Number of Sequences: 28952
Number of extensions: 329800
Number of successful extensions: 1007
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)