Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021867X
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    27   1.4  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   1.8  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    25   9.6  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   9.6  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 499 CHGQRELQTATISIPNTN 446
           C+G+R ++  TIS+P TN
Sbjct: 638 CNGERRIRVLTISLPTTN 655


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 457  PNTNISDSPL--RMRNVDVRFA*AYRQAILSNGTTVILQILSMNVSN 323
            P  N++  P+  R R   +RF    R A++ +GT+ ++Q   MN S+
Sbjct: 1089 PIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCSD 1135


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 504 RDVMASVNFKPPLYLYRILIYRTHPYACA 418
           ++V+A V  + PL  YR+ I  T+P  C+
Sbjct: 207 KEVLAQVLQEIPLQDYRVPILGTYPNTCS 235


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 120 GAN*AYMCLLNIMICVLFFEFIDLV 46
           G N   +CLLN    +L FE+I ++
Sbjct: 373 GKNKTLICLLNFQSSLLSFEWISII 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,005
Number of Sequences: 5004
Number of extensions: 38834
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)