Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021867X
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28313| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_54867| Best HMM Match : Pkinase (HMM E-Value=5.6e-05)               27   7.6  
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             27   7.6  

>SB_28313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 409 VRFA*AYRQAILSNGTTVILQILSMNVSNMTL 314
           +RF    R A+L++GT+ +LQ    N SN T+
Sbjct: 39  IRFGEMERDALLAHGTSFLLQDRLFNCSNKTM 70


>SB_54867| Best HMM Match : Pkinase (HMM E-Value=5.6e-05)
          Length = 387

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 446 ISIRYRYSGGLKFTLAMTSRL 508
           I IRYRY  G + T+AMT+ L
Sbjct: 152 IPIRYRYDRGRRHTIAMTTPL 172


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 511 CKPRCHGQRELQTATISIPNTNISDSP 431
           C  RC G R  Q A +  P+ ++SD P
Sbjct: 717 CPRRCCGPRRPQAAIVHRPSVHVSDLP 743


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,652
Number of Sequences: 59808
Number of extensions: 278256
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)