Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021867X
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    29   2.0  
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         28   3.5  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 493 GQRELQTATISIPNTNISDSPLRMRNVDVRFA*AYRQA 380
           G+R ++   +SIP TN+  +  R  ++D +FA   +QA
Sbjct: 820 GERRIRVLNLSIPCTNMLSNLFRSADLDSQFACMLKQA 857


>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 496 HGQRELQTATISIPNTNISDSPLRMRNVDVRFA*AYRQA 380
           +G+R ++  T+S+  TN+  +  R  ++D +FA   +QA
Sbjct: 804 YGERRIRVTTLSLSCTNMLSNLFRAADLDSQFACMLKQA 842


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,531,018
Number of Sequences: 28952
Number of extensions: 188123
Number of successful extensions: 338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)