Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021866X
(524 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 27 0.10
At1g49010.1 68414.m05495 myb family transcription factor contain... 31 0.47
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ... 31 0.63
At3g28650.1 68416.m03576 DC1 domain-containing protein similar ... 30 1.1
At4g01740.1 68417.m00226 DC1 domain-containing protein similar t... 29 1.4
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 29 2.5
At3g27480.1 68416.m03436 DC1 domain-containing protein contains ... 29 2.5
At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative 29 2.5
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain... 28 3.3
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 28 3.3
At3g49590.2 68416.m05420 expressed protein 28 3.3
At3g49590.1 68416.m05419 expressed protein 28 3.3
At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containi... 28 4.4
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 28 4.4
At2g02690.1 68415.m00208 hypothetical protein 28 4.4
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei... 28 4.4
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 28 4.4
At5g66370.1 68418.m08368 hypothetical protein similar to unknown... 27 5.8
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ... 27 5.8
At2g01900.1 68415.m00124 endonuclease/exonuclease/phosphatase fa... 27 5.8
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 27 7.7
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ... 27 7.7
At4g28620.1 68417.m04092 ABC transporter family protein identica... 23 8.3
At5g63720.1 68418.m07998 hypothetical protein 23 8.6
At1g05310.1 68414.m00538 pectinesterase family protein contains ... 23 8.8
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 27.1 bits (57), Expect(2) = 0.10
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 164 TPGPLSGHHHRHHNY 120
+P P S HHH HH++
Sbjct: 324 SPSPHSKHHHHHHHH 338
Score = 25.0 bits (52), Expect(2) = 0.10
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 143 HHHRHHNYFPR 111
HHH HHN P+
Sbjct: 350 HHHHHHNLSPK 360
>At1g49010.1 68414.m05495 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 314
Score = 31.1 bits (67), Expect = 0.47
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 221 LSPGKH-SSSLGHPCGLANETPGPLSGHHHRHHNYFPRPPY 102
++P H S++G P L P P+ HHH HH++ PY
Sbjct: 257 IAPPDHMGSAVGTPVML----PPPMGTHHHHHHHHLGVAPY 293
>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 668
Score = 30.7 bits (66), Expect = 0.63
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 286 WGFGKQGFQCQVCSVVVHKRCHE 354
+GF G+ C+ CS +VH++C E
Sbjct: 34 FGFTSGGYYCESCSFLVHRKCVE 56
>At3g28650.1 68416.m03576 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 665
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +1
Query: 232 HAEILQAATFCSHCK-DFIWGFGKQGFQCQVCSVVVHKRCHEYVTFTCPGADKGADSDDT 408
H L +F H + D + F ++G+ C C +VVHK C + + +
Sbjct: 124 HHHPLHFISFRLHLQCDVCYMFRRKGYFCFQCKLVVHKECVSKI-------ESAVITHPF 176
Query: 409 RTRHNFRVYTYSSPTFCD 462
RH ++ T +P + D
Sbjct: 177 HARHPLKLLTDGAPDYTD 194
>At4g01740.1 68417.m00226 DC1 domain-containing protein similar to
T15B16.6 similar to A. thaliana CHP-rich hypothetical
proteins encoded by T10M13, GenBank accession number
AF001308
Length = 652
Score = 29.5 bits (63), Expect = 1.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 304 GFQCQVCSVVVHKRCHE 354
G+ C++C + VHK+C E
Sbjct: 37 GYYCKICDIFVHKKCGE 53
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 28.7 bits (61), Expect = 2.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 295 GKQGFQCQVCSVVVHKRCHE 354
G G+ C C + VHK C E
Sbjct: 76 GLHGYNCNTCGLTVHKECAE 95
>At3g27480.1 68416.m03436 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 604
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +1
Query: 262 CSHCKDFIWGFGKQGFQCQVCSVVVHKRCHEYVTFTCPGADKGADSDDTRTRHNFRVYTY 441
CS C I +G++C C +V+H RC TF D + RH + T
Sbjct: 137 CSFCHK-IGNEDSKGYRCLRCGLVIHTRC----TFI---FDSPEITHPAHVRHPLKRLTD 188
Query: 442 SSPTFCD 462
+P + D
Sbjct: 189 GAPNYTD 195
>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
Length = 233
Score = 28.7 bits (61), Expect = 2.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 155 PLSGHHHRHHNYFPRPPYRFAVAKC 81
PL HH+H +Y P P + +++C
Sbjct: 107 PLCTQHHQHVSYVPHPAHLLELSQC 131
>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein hypothetical proteins -
Arabidopsis thaliana contains Pfam profile PF00564: PB1
domain
Length = 476
Score = 28.3 bits (60), Expect = 3.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 155 PLSGHHHRHHNYFPRPPYRFAV 90
P + +HH +H Y+ RPP + +
Sbjct: 349 PATAYHHTNHVYYQRPPQPYPI 370
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.3 bits (60), Expect = 3.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 304 GFQCQVCSVVVHKRCHE 354
GF C+ C + +HK+C E
Sbjct: 376 GFYCKSCDIFIHKKCGE 392
>At3g49590.2 68416.m05420 expressed protein
Length = 603
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 312 VPSVQCRGAQAMPRVCYLHVSRRRQGGGFRRHTHETQLSRLHVFFSNVLRSLWLSAVRAH 491
+PS+Q RG + R+ L+V + + L +LH + N+L S+ + + H
Sbjct: 34 IPSLQSRG-RTRERLSGLNVRKSDKWFNLVMGDRPAALEKLHSWHRNILDSMIIDIILVH 92
Query: 492 P 494
P
Sbjct: 93 P 93
>At3g49590.1 68416.m05419 expressed protein
Length = 603
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 312 VPSVQCRGAQAMPRVCYLHVSRRRQGGGFRRHTHETQLSRLHVFFSNVLRSLWLSAVRAH 491
+PS+Q RG + R+ L+V + + L +LH + N+L S+ + + H
Sbjct: 34 IPSLQSRG-RTRERLSGLNVRKSDKWFNLVMGDRPAALEKLHSWHRNILDSMIIDIILVH 92
Query: 492 P 494
P
Sbjct: 93 P 93
>At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 709
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 152 LSGHHHRHHNYFPRPPYRFAVAKCA 78
L+ HHH HH +F P F+ A
Sbjct: 20 LTHHHHHHHRFFQPPISAFSATTSA 44
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 27.9 bits (59), Expect = 4.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 143 HHHRHHNYFPRPP 105
HHH++H+Y P PP
Sbjct: 521 HHHQNHSYEPAPP 533
>At2g02690.1 68415.m00208 hypothetical protein
Length = 623
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 235 AEILQAATFCSHCKDFIWGFGKQGFQCQVCSVVVHKRCHE 354
+E+ FC C I + K ++C C ++H+RC E
Sbjct: 382 SEVYDQEKFCQACALPI--YEKNFYECVECDFILHERCVE 419
>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 455
Score = 27.9 bits (59), Expect = 4.4
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 136 WW*PESGPGVSFARPQGCPKEEECLPGERSQIH-AEILQAATFCSHCKDFIWGFGKQGFQ 312
W PE ++F R Q C K + P + S ++ E+ + C+ C + KQ
Sbjct: 340 WLCPECS-FLNFTRNQSCLKCKAKGPKKTSMVNIVEMKKGDWNCTGCGYMNFASNKQ--- 395
Query: 313 CQVCSVVVHKRCHEYVTFTCPGAD 384
C+ C HK E + CP D
Sbjct: 396 CRECREQRHKTLAEPGDWECPSCD 419
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 161 PGPLSGHHHRHHNYFPRPPYRFAVAK 84
PGP+SG HH P PP V +
Sbjct: 427 PGPMSGFHHPPGGPMPGPPQHMYVGQ 452
>At5g66370.1 68418.m08368 hypothetical protein similar to unknown
protein (emb CAB62624.1)
Length = 150
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -1
Query: 215 PGKHSSSLGHPCGLANE-TPGPLSGHHHRHHNYFPRPP 105
P K +G G A E T GHHH H +++P P
Sbjct: 57 PHKLLKLMGSVKGKAAEMTFVKTGGHHHHHQHHYPHEP 94
>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
Pfam profilePF03107: DC1 domain
Length = 569
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 256 TFCSHCKDFIWGFGKQGFQCQVCSVVVHKRC 348
T C C++ I GF C++C+ ++H C
Sbjct: 462 TSCKSCREDIKGFN---LFCRICNFIIHVSC 489
>At2g01900.1 68415.m00124 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 417
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 239 RFFKQRRFVPTAKISYGALENKDSSAKCAVSWC 337
+F ++VP + + YG + K K A +WC
Sbjct: 314 KFAPTYKYVPNSDLYYGCITYKKDEKKRAPAWC 346
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Frame = +1
Query: 313 CQVCSVVVHKRC----HEYVT---FTCPGADKGADSDDTRTRHNFRVYTYSSPTFCDHCG 471
C+ C H C H+ V+ + CP + D T + V + S T CD CG
Sbjct: 218 CKRCDAAYHCYCQHPPHKNVSSGPYLCPKHTRCHSCDSTVPGNGLSVRWFLSYTCCDACG 277
Query: 472 SL 477
L
Sbjct: 278 RL 279
>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 574
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +1
Query: 175 RPQGCPKEEECLPGERSQIHAEILQAATFCSHCKDFIWGFGKQGFQCQVCSVVVHKRCHE 354
+P PK++ +P ++ + Q+ ++C+ C G + C C+ H C E
Sbjct: 7 QPMDQPKQKVKIPCNHMLLYIHLTQSYSYCAVCN----GDYGLCYYCSRCNFQAHSECIE 62
Query: 355 Y 357
+
Sbjct: 63 W 63
>At4g28620.1 68417.m04092 ABC transporter family protein identical
to half-molecule ABC transporter ATM2 GI:9964119 from
[Arabidopsis thaliana]
Length = 680
Score = 23.4 bits (48), Expect(2) = 8.3
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1
Query: 143 HHHRHHNYF 117
HHH HH++F
Sbjct: 25 HHHLHHSFF 33
Score = 21.8 bits (44), Expect(2) = 8.3
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -1
Query: 149 SGHHHRHH 126
SG+HH HH
Sbjct: 20 SGYHHHHH 27
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 23.0 bits (47), Expect(2) = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 215 PGKHSSS-LGHPCGLANETPGPLSGHHHRHHNY 120
PGK + +G + N+ G + HHH HH++
Sbjct: 346 PGKQRRNVMGRFKRIKNKI-GQIFHHHHHHHHH 377
Score = 22.2 bits (45), Expect(2) = 8.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = -1
Query: 143 HHHRHHNYFPRPP 105
HHH HH++ P
Sbjct: 374 HHHHHHHHDKEKP 386
>At1g05310.1 68414.m00538 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 393
Score = 23.0 bits (47), Expect(2) = 8.8
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -1
Query: 143 HHHRHHNYFPRP 108
HHH HH++ +P
Sbjct: 52 HHHHHHHHRHKP 63
Score = 22.2 bits (45), Expect(2) = 8.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1
Query: 152 LSGHHHRHHNY 120
L HHH HH++
Sbjct: 44 LCDHHHHHHHH 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,694,222
Number of Sequences: 28952
Number of extensions: 283890
Number of successful extensions: 1240
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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