Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021865X
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0827 + 32260313-32260525,32261862-32262716                       35   0.038
05_03_0461 - 14299138-14299313,14299360-14299437,14299459-142995...    29   3.3  
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178...    29   3.3  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    28   4.4  
02_04_0078 + 19507705-19508169                                         28   5.8  
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966...    27   7.6  

>01_06_0827 + 32260313-32260525,32261862-32262716
          Length = 355

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 446 ERESNPMEALCRSGCGFYGNPPQTDFAQFALRK 544
           ++ S     LC SGCGFYGNP   D      R+
Sbjct: 195 QQASAGQPVLCASGCGFYGNPATLDMCSVCYRQ 227


>05_03_0461 -
           14299138-14299313,14299360-14299437,14299459-14299583,
           14299918-14300078
          Length = 179

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 518 PSVGDCRRNRSLIGKALP*DL-IHAPLFHYNFTLTTSF 408
           P++   R  R + G+ L   L +HAPL   +FTL  SF
Sbjct: 126 PAINHPREERFIAGRRLSRKLPLHAPLLRCHFTLICSF 163


>03_03_0277 +
           16116017-16117424,16117461-16117660,16117739-16117816,
           16118381-16118533,16118969-16119280,16119390-16119563,
           16120411-16120498,16120598-16120611
          Length = 808

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = -2

Query: 332 SAVITMRTNLLSNVGQVTSG-LCSAQQFPCW*YTIATSVSGPLKDTLLLKKRVSNQTNVF 156
           SA   M   L+SNV  + +G L   ++      +  T   G  K T +  KR+ N   ++
Sbjct: 548 SANTVMGRELISNVQVINNGDLEDLREIGSG--SFGTVFHGRWKGTDVAIKRIKNSCFMY 605

Query: 155 PSAQSLQLTNKRHHVCAVVVSIHRHHN 75
           PS+Q+ +L  +     A++  +H H N
Sbjct: 606 PSSQADKLITEFWREAAIISKLH-HPN 631


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 281 TSGLCSAQQFPCW*YTIATSVSGPLKDTLLLKKRVSNQTNVFPSAQSLQLTNKRHHV 111
           T  LC +++ P W      + SG L++  L+  R ++  +   +  S    NK HHV
Sbjct: 592 TIRLCPSRRIPSWNLIARENSSGSLEEEFLISPRTNHHADGGIAGPS----NKNHHV 644


>02_04_0078 + 19507705-19508169
          Length = 154

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 473 LCRSGCGFYGNPPQTDFAQFALRKR 547
           LC + CGF+G+P   D      R R
Sbjct: 14  LCANNCGFFGSPATLDLCSKCYRDR 38


>08_01_0963 -
           9661699-9661760,9662095-9662818,9662860-9663265,
           9663488-9665037
          Length = 913

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 213 TFEGHTVVEKESFEPNKCLSKCAVPSAHKQATPRLCGCS 97
           T+E   +++  SFE NK LS+  +PS+  + +    G S
Sbjct: 32  TYEAEDILDLASFEGNKLLSQNPLPSSSSRNSTGCTGFS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,054
Number of Sequences: 37544
Number of extensions: 271541
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)