Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021865X
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20) 36 0.017
SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1) 30 1.1
SB_8211| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75) 30 1.5
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 28 4.5
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17) 28 4.5
SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14) 28 5.9
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 28 5.9
SB_8208| Best HMM Match : ShTK (HMM E-Value=1.2e-21) 28 5.9
SB_11298| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)
Length = 187
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/24 (62%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = +2
Query: 440 TMERESNPME--ALCRSGCGFYGN 505
+MERE+N + LCR+GCGFYGN
Sbjct: 4 SMERETNQTQQPTLCRNGCGFYGN 27
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 493 FLRQSPTDGLCSVCFKEALKK 555
F S TDG+CS C+K+ L++
Sbjct: 24 FYGNSATDGMCSKCWKDVLRR 44
>SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 446 ERESNPMEALCRSGCGFYGNPPQTDFAQFALRK 544
ER +NP E C++GCGFYGNP + R+
Sbjct: 13 ERLNNP-ELRCKTGCGFYGNPAWQGYCSVCFRE 44
>SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)
Length = 614
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 225 FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 118
FC + G+T V+ ES PN C S PS +T
Sbjct: 575 FCQKISTGNTQVQPESLSPNICCSHLPQPSCVSPST 610
>SB_8211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 269 CSAQQFPCW*YTIATSVSGPLKDTLLLKKRVSNQTNVFPSAQSLQLTNKRHHVC 108
CSA C + ++ + PL + R+S NVFPS Q+ +KR +C
Sbjct: 253 CSAYSGDCDIFVLSFCCTLPLFPHVQTYSRISIGPNVFPSVQTYSRVSKRIPLC 306
>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
Length = 1167
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 225 FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 118
FC + G+T V+ ES PN C S PS +T
Sbjct: 1093 FCQKISTGNTQVQPESLPPNICCSHLPQPSCVSTST 1128
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 28.3 bits (60), Expect = 4.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 155 PSAQSLQLTNKRHHVCAVVVSIHRHH 78
PS+ S+ + + HH + ++ IH HH
Sbjct: 144 PSSSSIIIIHHHHHPSSSIIIIHHHH 169
>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
Length = 1189
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 265 EHKPDVTWPTFESKLVRIV 321
EHKPDV WP+ + LV V
Sbjct: 408 EHKPDVVWPSAQPILVSTV 426
>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
Length = 453
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = -2
Query: 179 VSNQTNVFPSAQSLQLTNKR--HHVCAVVVS---IHRHHNEWLQNFE*K 48
+ +QTNV+P+A+ ++ N R H + AV+V+ + + E +N E K
Sbjct: 231 ILDQTNVYPNARRRKMNNFRGFHRIAAVLVTTNEVLKERTERRENLEGK 279
>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
Length = 1222
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 285 SYVWLMFGTAVSLLVVYDRYFCVRTFEGHTVVEKESFEPNKCLSKC 148
+Y W +FG +V+ +R C F+G ++++ ++ N LS C
Sbjct: 1136 AYDWFLFGNSVASKP--NRQRCDSEFDGAVLLDEWNYGSNASLSSC 1179
>SB_8208| Best HMM Match : ShTK (HMM E-Value=1.2e-21)
Length = 226
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 422 K*NYSGTMERESNPMEALCRSGCGFYGNPP 511
K N G R M CR CGF G P
Sbjct: 160 KVNIDGYCRRHKTYMNIYCRKSCGFCGKAP 189
>SB_11298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 437 GTMERESNPMEALCRSGCGFYGNPPQ 514
G+ + S + + SGCGFYGN P+
Sbjct: 38 GSARKISFSITIMPASGCGFYGNRPR 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,937,005
Number of Sequences: 59808
Number of extensions: 344137
Number of successful extensions: 826
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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