Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021865X
(555 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23524-3|AAC46823.2| 257|Caenorhabditis elegans Mirp k channel ... 29 1.7
U23524-2|ABD63241.1| 303|Caenorhabditis elegans Mirp k channel ... 29 1.7
AF541978-1|AAO65851.1| 256|Caenorhabditis elegans MPS-1 protein. 29 1.7
U40060-4|AAY86193.1| 406|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z71262-2|CAA95809.1| 189|Caenorhabditis elegans Hypothetical pr... 28 3.9
AL031633-3|CAD56609.1| 545|Caenorhabditis elegans Hypothetical ... 28 5.2
AC024817-5|ABQ13054.1| 274|Caenorhabditis elegans Hypothetical ... 27 6.9
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 27 9.1
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 27 9.1
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 27 9.1
>U23524-3|AAC46823.2| 257|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 1, isoform a protein.
Length = 257
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 124 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDKA 2
S +T++ + S+S+ +MN N NS +++P+TY++D A
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLDTNA 237
>U23524-2|ABD63241.1| 303|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 1, isoform b protein.
Length = 303
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 124 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDKA 2
S +T++ + S+S+ +MN N NS +++P+TY++D A
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLDTNA 237
>AF541978-1|AAO65851.1| 256|Caenorhabditis elegans MPS-1 protein.
Length = 256
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 124 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDKA 2
S +T++ + S+S+ +MN N NS +++P+TY++D A
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLDTNA 237
>U40060-4|AAY86193.1| 406|Caenorhabditis elegans Hypothetical
protein F38B6.8 protein.
Length = 406
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 188 KKRVSN-QTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQN 60
K +SN +T + ++Q+L T HV V+ ++ +HN WLQN
Sbjct: 71 KLEISNDETVILHTSQTLFETPVHSHVDTNVLRVY-YHNSWLQN 113
>Z71262-2|CAA95809.1| 189|Caenorhabditis elegans Hypothetical
protein F22D6.2 protein.
Length = 189
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 493 FLRQSPTDGLCSVCFKEALKK 555
F S T+G CS CFK LK+
Sbjct: 20 FFGASATEGYCSQCFKNTLKR 40
>AL031633-3|CAD56609.1| 545|Caenorhabditis elegans Hypothetical
protein Y39A1A.5 protein.
Length = 545
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 467 EALCRSGCGFYGNP 508
+ LC +GCGFYG P
Sbjct: 48 DLLCVNGCGFYGTP 61
>AC024817-5|ABQ13054.1| 274|Caenorhabditis elegans Hypothetical
protein Y54G2A.12 protein.
Length = 274
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 261 TAVSLLVVYDRYFCVRTFEGHTVVEKE 181
T + L VYDR VRT+ GH + +E
Sbjct: 197 TKIKLWEVYDRQRVVRTYSGHKLPVRE 223
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 261 TAVSLLVVYDRYFCVRTFEGHTVVEKE 181
T + L VYDR VRT+ GH + +E
Sbjct: 298 TKIKLWEVYDRQRVVRTYAGHKLPVRE 324
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 269 CSAQQFPC-W*YTIATSVSGPLKDTLLLKKRVSNQTN 162
CSA QFPC W V+G L + K+ + N N
Sbjct: 660 CSASQFPCDWCLESNECVAGKLTEDKCRKQHIVNGLN 696
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
protein.
Length = 1951
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 269 CSAQQFPC-W*YTIATSVSGPLKDTLLLKKRVSNQTN 162
CSA QFPC W V+G L + K+ + N N
Sbjct: 666 CSASQFPCDWCLESNECVAGKLTEDKCRKQHIVNGLN 702
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,615,847
Number of Sequences: 27780
Number of extensions: 253037
Number of successful extensions: 658
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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