Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021865X
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.4  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = +2

Query: 2   CLVINCISFWMIFFRIFIQSFV 67
           CL + C++FW       +  F+
Sbjct: 387 CLTVVCLAFWSFIVSTILLWFI 408


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 179 LSFSTTVCPSKVLTQK*RSYTTNKETAVPN 268
           +S  T+VCPS+++    ++    K+  +P+
Sbjct: 143 ISGETSVCPSQIVVFDLKNSKLLKQVKIPH 172


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 253 NCCAEHKPDVTW 288
           +CC E  PD+T+
Sbjct: 194 SCCPEPYPDITY 205


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 82  CRWMLTTTAQTWCRLFVS*RDC 147
           C+   T TA T C+L+   R C
Sbjct: 174 CKRTATITAATDCQLWAIDRQC 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,333
Number of Sequences: 438
Number of extensions: 2908
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)