Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021865X
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein c...    29   2.1  
At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein c...    29   2.1  
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta...    28   3.6  

>At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 176

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 434 SGTMERESNPMEALCRSGCGFYGNPPQTDFAQFALR 541
           S T  + S P   LC  GCGF+G+P   D      R
Sbjct: 10  SFTQSQASEPK--LCVKGCGFFGSPSNMDLCSKCYR 43


>At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 176

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 434 SGTMERESNPMEALCRSGCGFYGNPPQTDFAQFALR 541
           S T  + S P   LC  GCGF+G+P   D      R
Sbjct: 10  SFTQSQASEPK--LCVKGCGFFGSPSNMDLCSKCYR 43


>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
          domain-containing protein similar to SP|Q9UBS4 DnaJ
          homolog subfamily B member 11 precursor Homo sapiens;
          contains Pfam profile PF00226 DnaJ domain
          Length = 300

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 17 CISFWMIFFRIFIQSFVTIHCDAGGC 94
          C++  ++F  +F+QS   I+C A  C
Sbjct: 10 CLALILLFLSLFVQSSTAIYCGAEDC 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,708,488
Number of Sequences: 28952
Number of extensions: 227191
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)