Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021864X
         (502 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.2  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 335 DCHRYGISTSSGTGHTIYEHGRFGD 409
           D H+YG +T S    +++ H   G+
Sbjct: 390 DMHQYGYNTLSPLPSSVHSHSTIGN 414


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 259 TPRPSLPSSGRPCPAILV 206
           TP   L   G PCP I++
Sbjct: 312 TPNVVLDEEGNPCPDIII 329


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 288 IAGRAVLLAGQPGTGKTAIAM 350
           ++GR ++   Q G+GKTA  M
Sbjct: 193 LSGRDLMSCAQTGSGKTAAFM 213


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 47  ISIKTTSLVFKIPRKWL 97
           ++  TTSL   +P +W+
Sbjct: 686 VTTYTTSLFINVPPRWI 702


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,713
Number of Sequences: 336
Number of extensions: 2267
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)