Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021864X
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 132 3e-32
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 97 1e-21
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 38 0.001
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 37 0.001
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 37 0.002
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 36 0.003
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 36 0.003
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 35 0.006
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 35 0.008
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 33 0.018
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 33 0.024
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 32 0.042
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 32 0.042
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 32 0.056
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 31 0.097
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 31 0.13
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 31 0.13
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 30 0.17
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.22
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 30 0.22
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 29 0.39
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 29 0.39
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 0.69
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 0.69
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 27 1.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 1.2
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 1.2
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 1.6
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 27 2.1
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 2.8
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 26 2.8
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 26 2.8
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 26 2.8
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 26 3.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 3.7
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 26 3.7
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 4.8
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 25 4.8
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 4.8
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 25 6.4
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.4
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 8.4
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 25 8.4
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 8.4
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 25 8.4
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 8.4
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 132 bits (319), Expect = 3e-32
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3
Query: 243 KEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLE 422
+ GVIL+MI+EG+IAGRA+L+AG P TGKTAIAMG+AQ+LG DTPF +++ SE++SLE
Sbjct: 48 RRAAGVILKMIQEGRIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLE 107
Query: 423 MSKTEALTQAIRKSIGIRIKEESEII 500
MSKTEAL QA+RKSIG+RIKEE+EII
Sbjct: 108 MSKTEALLQALRKSIGVRIKEETEII 133
Score = 65.7 bits (153), Expect = 4e-12
Identities = 27/41 (65%), Positives = 38/41 (92%)
Frame = +1
Query: 133 ITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAA 255
++++ERIGAHSHI+G+GL+D+LEP++ SQGMVGQ AR+AA
Sbjct: 11 VSKLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAA 51
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 97.1 bits (231), Expect = 1e-21
Identities = 43/88 (48%), Positives = 60/88 (68%)
Frame = +3
Query: 234 EDGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIF 413
E +E G+I +I+ K G+ VL AG GTGKTA+A+ +AQ LGP PF M GSE++
Sbjct: 44 EKAREACGIITDLIKSKKFGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVY 103
Query: 414 SLEMSKTEALTQAIRKSIGIRIKEESEI 497
S E+ KTEAL + R++IG+R+KE E+
Sbjct: 104 SSEIKKTEALMENFRRAIGLRVKETKEV 131
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +1
Query: 112 QVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKA 252
Q+ EV+ R RI HSHI+GLGL + V G +GQ+ AR+A
Sbjct: 3 QISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREA 49
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 267 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
++ +G VLL G PGTGKT +A +A L + F S+ G E+ ++ + ++EA
Sbjct: 679 ELFSQGLKPRSGVLLYGPPGTGKTLLAKAVATELSLE--FVSIKGPELLNMYVGESEA 734
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 37.1 bits (82), Expect = 0.001
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 267 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALT 446
Q+ G+ +LL G PGTGK+ +A +A G + F S++ S++ S M ++E L
Sbjct: 153 QLFSHGRKPWSGILLYGPPGTGKSYLAKAVATEAG--STFFSISSSDLVSKWMGESERLV 210
Query: 447 QAI 455
+ +
Sbjct: 211 RQL 213
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 267 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
+ +R G + VL G PGTGKT +A +A + F S+ G E+ S+ ++E+
Sbjct: 522 KFLRFGVTPSKGVLFFGPPGTGKTLLAKAIANECSAN--FISVKGPELLSMWFGESES 577
Score = 31.5 bits (68), Expect = 0.074
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
R +L+ G PGTGKT +A +A G F + G EI S ++E+
Sbjct: 259 RGILMYGPPGTGKTLMARAVANETG--AFFFLINGPEIMSKMAGESES 304
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 35.9 bits (79), Expect = 0.003
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
R G R +L+G PGTGKT +A A A + PF S++GSE +
Sbjct: 323 RLGAKIPRGAILSGPPGTGKTLLAK--ATAGEANVPFLSVSGSEFLEM 368
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 35.9 bits (79), Expect = 0.003
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFS 416
R VLL G PG GKT +A LA LG PF S++ I S
Sbjct: 209 RGVLLHGPPGCGKTMLANALANELG--VPFISISAPSIVS 246
Score = 29.1 bits (62), Expect = 0.39
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
G A VLL G PG GKT +A +A F S+ G E+ + + ++E + +
Sbjct: 522 GISAPTGVLLWGPPGCGKTLLAKAVANE--SKANFISIRGPELLNKYVGESERAVRQV 577
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 35.1 bits (77), Expect = 0.006
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 407
GK+ R VLL G PGTGKT +A +A + PF M+GS+
Sbjct: 297 GKLP-RGVLLTGPPGTGKTMLARAVAGE--ANVPFFFMSGSQ 335
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 34.7 bits (76), Expect = 0.008
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
+L G+PG GKT+IA GLA+ + D +++ ++ SL++ A
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVPANLSNCKLLSLDVGSLVA 250
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 33.5 bits (73), Expect = 0.018
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
R +LL G PGTGKT +A A A + F S++ S + S + ++E L +A+
Sbjct: 493 RGMLLFGPPGTGKTMLAR--AVATESRSVFFSISASSLTSKFLGESEKLVRAL 543
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.024
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 273 IREGKIAGRAVLLAGQPGTGKTAIAMGLAQALG 371
+R G + VLL G PGTGKT +A +A +LG
Sbjct: 159 LRVGIKPPKGVLLYGPPGTGKTLLARAVAASLG 191
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 32.3 bits (70), Expect = 0.042
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ +LL G PGTGKT +A +A D F ++GSE+
Sbjct: 180 KGILLYGPPGTGKTLLARAVAH--HTDCKFIRVSGSEL 215
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 32.3 bits (70), Expect = 0.042
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +3
Query: 243 KEGRGVILQMIREGKIAG----RAVLLAGQPGTGKTAIAMGLAQAL 368
K+ + +L+++ GK+ G + + L G PG GKT++ +A AL
Sbjct: 550 KDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASAL 595
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 31.9 bits (69), Expect = 0.056
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
+ +LL G PGTGKT +A A A F S++ S + S + +E L +A+
Sbjct: 413 QGMLLFGPPGTGKTMLAR--AVATEAKATFFSISASSLTSKYLGDSEKLVRAL 463
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 31.1 bits (67), Expect = 0.097
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE 437
+ +LL G PGTGKT IA + + L P + G EI + + ++E
Sbjct: 305 KGILLYGPPGTGKTLIARQIGKMLNAREP-KIVNGPEILNKYVGQSE 350
Score = 30.7 bits (66), Expect = 0.13
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 246 EGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 407
EG+ + Q+ + +VLL+G +GKTA+A + ALG + PF + +E
Sbjct: 569 EGKLFVQQVKNSERTRLVSVLLSGPIASGKTALAATI--ALGSEFPFVKLVSAE 620
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 30.7 bits (66), Expect = 0.13
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 407
R VLL G PGTGKT + +A + + F + GSE
Sbjct: 169 RGVLLYGPPGTGKTMLVKAVANSTAAN--FIRVVGSE 203
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 30.7 bits (66), Expect = 0.13
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE-ALTQAIRKS 464
+ VLL G PG KT A +A G + F ++ G E+F + ++E A+ Q +K+
Sbjct: 583 KGVLLYGPPGCSKTITAKAIATETGLN--FIAVKGPELFDKFVGESERAVRQVFQKA 637
Score = 28.7 bits (61), Expect = 0.52
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
R VLL G PGTGKT + +A FT + G + + +TE+ + I
Sbjct: 314 RGVLLYGPPGTGKTMVMRAVAAEANAQV-FT-IDGPSVVGKYLGETESRLRKI 364
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 30.3 bits (65), Expect = 0.17
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ ++L G PGTGKT A +A D F + GSE+
Sbjct: 214 KGIMLYGPPGTGKTLCARAVANR--TDATFIRVIGSEL 249
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 29.9 bits (64), Expect = 0.22
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQA 365
R VL G PGTGKT +A LA A
Sbjct: 301 RGVLFHGPPGTGKTLMARALAAA 323
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 29.9 bits (64), Expect = 0.22
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ V+L G PGTGKT +A +A F + GSE+
Sbjct: 226 KGVILYGAPGTGKTLLAKAVANQ--TSATFLRVVGSEL 261
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 29.1 bits (62), Expect = 0.39
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRKSIG 470
AG A+ ++G PGTGKT + + + D P ++ I + +++ +A+ + I I
Sbjct: 191 AGGALYVSGAPGTGKTVLLHNVLDHVVSDYPKVNVC--YINCMTINEPKAIFEKIHSKI- 247
Query: 471 IRIKEE 488
+KEE
Sbjct: 248 --VKEE 251
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 29.1 bits (62), Expect = 0.39
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE 437
+LL G PG GKT +A ++ F S+ G E+ + K+E
Sbjct: 643 ILLFGYPGCGKTYLASAISSTF--PVQFISIKGPELLDKYIGKSE 685
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 0.69
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALG 371
+ +LL G PG GKT++ LA+ G
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETG 1584
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 288 IAGRAVLLAGQPGTGKTAIAMGLAQAL 368
+A VLL G G GKT + LA+ L
Sbjct: 1184 LAKEPVLLVGDTGCGKTTVCQILAECL 1210
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.3 bits (60), Expect = 0.69
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPD 377
+AVLL+G PG GKT A +A+ G D
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAKLEGYD 436
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMS-KTEALTQAIRKSIGIRI 479
VLL G PGT K+ + + L P +TS GS L S + +++T+ G +
Sbjct: 368 VLLLGDPGTAKSQF-LKFVERLAPIAVYTSGKGSSAAGLTASIQRDSVTREFYLEGGAMV 426
Query: 480 KEESEII 500
+ I+
Sbjct: 427 LADGGIV 433
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLA 359
R VL G PGTGKT +A LA
Sbjct: 407 RGVLFHGPPGTGKTLMARVLA 427
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = -1
Query: 424 ISKENISEPAMLVNGVSGPRACANPIAMAVFPVPG*PANNTARPAILPSRIICKMTPRPS 245
+ + NI E +V VS P+ + A P P PA+ + PS + + T
Sbjct: 57 VGEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQ 116
Query: 244 LPSSGRP 224
++ P
Sbjct: 117 TVAAAAP 123
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQAL 368
L+ G PGTGKT +G+ AL
Sbjct: 1149 LIQGPPGTGKTKTIIGIISAL 1169
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMA 398
R LL G PG+GKT+ LA L D ++A
Sbjct: 243 RGYLLYGPPGSGKTSFLYALAGELDYDICVLNLA 276
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQ 362
+++ G PGTGKT +A +A+
Sbjct: 11 IIICGTPGTGKTTLAEQVAE 30
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQAL-GP 374
+L G PGTGKT+ + L++ L GP
Sbjct: 55 MLFYGSPGTGKTSTILALSRELFGP 79
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 109 AQVQEVRSITRIERIGAHSHIRGLGLDD 192
A +++V T I+ +G HSHIR + D
Sbjct: 252 ASIRKVHPNTPIQILGGHSHIRDFAVYD 279
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQ 362
+ +LL G PG GKT +A LA+
Sbjct: 126 KGLLLYGPPGCGKTMLAKALAK 147
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -3
Query: 218 CDTCL-GSKESSKPSPLM---WECAPILSMRVIERTSCTC 111
CD+C S + SK S + W+ P + +ERTS TC
Sbjct: 223 CDSCFKSSPKHSKTSCIRTVDWKNPPTILQIQLERTSYTC 262
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 3.7
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1
Query: 367 WDRTHHLRAWPV 402
W + HH+R WP+
Sbjct: 532 WSKDHHVRLWPI 543
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTA-IAMGLAQAL 368
GR V+ Q GTGKTA ++G+ Q++
Sbjct: 58 GRDVIAQAQSGTGKTATFSIGILQSI 83
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQAL 368
L+ G PGTGKT +G+ A+
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAV 1310
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQA-LGP 374
++++G PG GKT + LA A LGP
Sbjct: 57 LVISGMPGIGKTTSILCLAHALLGP 81
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 109 AQVQEVRSITRIERIGAHSHIRGLGLDD 192
A +++V T I+ G HSHIR + D
Sbjct: 252 ASIRKVHPDTPIQIFGGHSHIRDFAVYD 279
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 6.4
Identities = 17/61 (27%), Positives = 22/61 (36%)
Frame = +3
Query: 222 HGRPEDGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 401
HG E E V GK RAVL+ +PGT + PD +G
Sbjct: 37 HGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSG 96
Query: 402 S 404
+
Sbjct: 97 A 97
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQAL 368
L+ G PGTGKT L ++L
Sbjct: 952 LILGMPGTGKTTTISSLIRSL 972
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTA 341
G + ++G PGTGKTA
Sbjct: 361 GACLYISGTPGTGKTA 376
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 121 EVRSITRIERIGAHSHIRGLGLDDSL 198
E+R+ R+ +G+H+H G D +
Sbjct: 33 EIRNAVRMHSVGSHTHTHDHGSDKEM 58
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 309 LAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
L G G GKTAI GLA + SM + L++
Sbjct: 137 LVGPAGVGKTAIMEGLASRIIRGEVPESMKDKRVIVLDL 175
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLA 359
+ L+ G PGTGKT +A A
Sbjct: 220 KGCLMFGPPGTGKTLLARACA 240
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQAL-GPD 377
+L G PGTGKT+ + A+ + GP+
Sbjct: 59 MLFYGPPGTGKTSTILACARKIYGPN 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,465
Number of Sequences: 5004
Number of extensions: 38756
Number of successful extensions: 157
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -